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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_SariMSG_c25574_g1_i3
Scaffold_id
NCBI non-redundant
(nr)		uncharacterized_protein_LOC110372427_isoform_X1_[Helicoverpa_armigera]
Ontology
GO:0000166 F nucleotide binding
GO:0000289 P nuclear-transcribed mRNA poly(A) tail shortening
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0004842 F ubiquitin-protein transferase activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006977 P DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest
GO:0008270 F zinc ion binding
GO:0016567 P protein ubiquitination
GO:0016874 F ligase activity
GO:0030014 C CCR4-NOT complex
GO:0044822 F RNA binding
GO:0046872 F metal ion binding
GO:0051865 P protein autoubiquitination
Transcript
Level		FPKM:15.95 TPM:10.18
ORF EntryO_SariMSG13165_complete:A_SariMSG_c25574_g1_i3
Sequence
(Nucleotide)
ATCTTGTAAAAGATTAGGCCATTTCATAAAACAAATGTATAGTAACTCGCAGAAAATATC
TTCGGGACAGTTATATTTATTTCAGCTTTGCATTTTATTTTAAATTGAATTGTGAACGGA
ATAATTGGTCTAGTGGAAAGGTTTCTTTCTCAATTCCAGTGGAAGGGTTAGCAGTCTTGA
TTCTGCAACATAAAATATTTGCTTTGAGAGGAGTCTTAAGGTCACGAAAAGGGTTCGAAA
GCTGGTTTTCGTTGACTTTCCACTGAGGAGCGTACCACCATTAACTCTTGGTGTTAGAAT
GTCAGTTCTGAATCAGAGCGGCGAAGAGCAGGTGGAATGTCCCCTGTGTATGGAACCGTT
GGAGGTGGACGATCTCCATTTTTACCCGTGCACATGTGGATATCAAATATGCCGGTTTTG
CTGGAACCGAATCCGGGAGGGCGAGAACGGTTTATGCCCTGCATGTCGCAAAGCCTACCC
GGAGAACCCGGCAGACTTCATTCCGCTCAGTCAAGAGCAGGTGGCAGCCATAAAGACGGA
GAAGAAAGCCCGCGAGCAGAAACGGCGGAACAAGACGTTGGAATCGCGGAAAGCGCTCGC
CAACGTGCGCGTTGTCCAAAACAACCTTGTGTTCGTTGTAGGTCTGCCCGTGCGGCTTGC
CGATCCCGAGATCCTCAAACGGCAAGAGTACTTTGGCAAATATGGCAAAATTCACAAAGT
AGTTATAAACCAAAGTACAACATATGCCGGTTCACAGGGTCCGTCGGCGTCCGCGTACGT
GACGTACGTTTCGCCGGCGGACGCGTTACGGGCGATACAGGGTGTGAACAACGTGACCCT
CGACGGGCGAGTGCTCAAGGGCTCCCTAGGCACCACCAAGTACTGCGCCAACTTCATGAA
GAACCAGCCCTGTCCAAAACCGGATTGCATGTATCTGCACGAGCTAGGTGATCCTAAAGC
GTCGTTCACGAAGGAAGAGATGCATGCGGGACTTCACCAGGTCTACGAGAGGAAACTGCA
CAATCAGCTGCTGGCGGTGCACAAGGACAAGCCGGAGGACAAAAACCAAAATAGTTCAGG
TAATTCTAGTACGAATGCAGATAAAAGCAGTTCAAAAGATGGTAATCCATCAAACTTTAT
ACCAACGACAGTGGTCACATCGTCACATATAAATGTAGTAAATTCTAAATCTAAAAAGGA
CTCTGTTAACGGCAGCGGAAGCGGTAGTGGGAGTAGCAGTAACGGTGTTAATGGTAACGG
TAAAGAGGCGTGGCCTAGTCTCAGTTCTTCACCACCCTCAGATAGTCCAGCCAGAAAACA
GTCCAGTCCTAAACCACAATATTCTACGGTTAAATCACAAGAAAACGGCACATCAGAATC
TTCCAGTCCCACACAACAACTCCAATCGAATTCACAACAGGCTCAAACGAGAAACAACAA
AGACACAACAAACACAACGGATAGTAATAGCAGCAAGACGAAAAATAACAAAGAATCGAA
CAGCACAAACGGACAAACTAGGAAATGTAATAAAAGTGACAAGACAAAACAGAAATCGAA
CAGCAGCAATAGTATTAATAACGATTACAGTGATGATACGAAATCGATAATAGAGGAGAA
CAACACACAGACGCCGAGCCCTTCGGTCTTTGATAATAATGAAATGCAACAGAATTATCT
ATCTAGCGAATTGGATGAACTCGAATCGGACAGACACAGCCTATTGGAGAACCATGACTT
ACTAGATAACAGTGATCACGGGCTATTAGACGATGATAACACACATAATTTGTTGAACGA
TGCAAATAATGAAGTGATTTTGCTCCAGAGGCACAGAGAGATGATGGCCGGTTTAGTTGA
GAATAATCATCTATTACCACATATGAATACGAAGAGTCCCATATTAAACGGATACGGGTT
GCTGGATAGAAATATTAGTTATATAGGCAACGATAGGCAGATTAGTCAAATTAATCAGGG
TCTGATGGACCAGAAGGAACTGCTGCTGAGGGACCGGAGCCAGAGCGAGATGCTGATGAG
ACAGAACGAGTTATTTGCGAGGCAACAGCACAACGCTATGGTCAAATCGAAACATTACAT
GCCATCGTCTAGTATAGGTCTCGAGTCGGCTAGTGAATTATTAGGTGCTAACTTTCATCA
GAATTCGAATATGCTACCATCGTTCGGTATGCGCGTTGAGAACTCAATGGGCGGTAGCAG
TACGGGGCATTCGATCAGTTCGATCGGCGGGTTCATGGTGCACAATCAGATGCCACAGAA
CCATCAGATGCCGCAGGCGGGACTCGTCAACGGTTACGAAGCGTCACAGTCAGCTAACGA
AGGTCGGTATCTAGCTGAGAATATGGACAAGTTCTTCACAGATTTCCACAAAGCCCAACA
GATGCGGCAACTGACGCGTCCGGTCGACGACAGACGTTACCGTGATCATCACATGTTGCC
GCACAACGTGATGAGTGCGGAGCGGCTCGAGATGGAACACAAACAGAGAATGAACAACAT
GCGTGGCCCGGAGATGGGGAGTCGCGCTGCGGGCGACGGGGACGACGATCTGGACTTTGA
TCCCTTCAAAGAGACCCAAAAGGCCTTCGCAGAACTCATGGAAAACGAAATGATGCACAG
CGCTGTCTCCAGCGGTGATAATATGGAGCGCGTGCGTCGGGCTCGACTGGCCCCACCCGG
GTTCGCACATCTGAATGCTTTCGCTGCACCAGCGCACCAAAACCACCATCAAGGGTACAA
TACGGGAAGTCCGATGTTCTCAGACTGGACGCAGATGGACCCGGCGATAATGTCGACTTC
GGTCGGCGGCGGTGGTCCCCCCGGCAACGGAGCCCTCAGCCCGCAACAGCAGGAGGTGCT
CGCGCGCTTCGGCCAGCTCGCCGTCGAGCCCCACCAGTGGGCGGGCGCACACCGCATGTC
ATGGGGCGCACCCACATTCAACGTACCGCTACCGCCCGGTTTCGCACCCGCGAAACCCCC
CCAGCGCCCCCAGGAATGTGTCGACGCGAACTGAGCGCCCCCCGGCTGCAACAACGCCGC
CCGACGACCGCCCCCCGCCCGCAACTCGAGATGAAATTTCTGTTCAACAACCATATTATT
CGTTTAAACAGCCGGTGATTGTGATCGATAAAAAAAATATCTTTGTATTATTAGAATGGA
GCATATTATAACGAGAGAAATATGAGATAACAAATTTCTATAATAAATTAACCTATTTGT
TTTATTTTAAATTATTTATTTATTTCTCTCTAGTTTAGTTTCGGCTCAACGTACGCGCC
(3299 bp)

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