SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_SariMSG_c25442_g1_i1
Scaffold_id
NCBI non-redundant
(nr)		sorbin_and_SH3_domain-containing_protein_1_[Helicoverpa_armigera]
Ontology
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005856 C cytoskeleton
GO:0005925 C focal adhesion
GO:0007015 P actin filament organization
GO:0007155 P cell adhesion
GO:0008134 F transcription factor binding
GO:0017166 F vinculin binding
GO:0030054 C cell junction
GO:0031589 P cell-substrate adhesion
GO:0043410 P positive regulation of MAPK cascade
GO:0051496 P positive regulation of stress fiber assembly
Transcript
Level		FPKM:3.85 TPM:2.46
ORF EntryO_SariMSG12880_5prime_partial:A_SariMSG_c25442_g1_i1
Sequence
(Nucleotide)
TCTCACAGGACTAAACACTTTAGGAAGTCCGTCGTCGAGCAGCCGCCTTCCGCGTGCTCC
GAACCCTACGGTCACTTTACTTCAAAAAGCACGAGAAGGCCAAATTTCACGTGGTGCAAG
TTATCTTCAATCAGATAGAGATAGCGCACGCTTACCGCGAGACCGTCCGTCACCACCGAA
GAGTGACCCAGTGCATGCACTACGAAAAGAATACGCAAGCGAAACTGAAGTGGAAAGAAG
CGACTACGAACGTGGAGGTCCTCGTAAAATGGCCGATGCCCAGAAGAAGATAGAAGGAAT
CGGACCGACAACCAAAGACGGCATACCTGTCGCACTTAGATCTGAAGTCAAAGACCCTTC
GAGGTGGTACAAAAAAATGTACGACACTATACACAAAAACAAGTACGATGACGATTATGT
GACTATACGATACAAAAATCGCCGAGGTCAACCGGAACGCATATCAAGCAACAAATCTCA
GTACGCATATTTCGATCCTCGTTCGGGATATCTAAGCGAACCCGAGGGAGGGCTTGGACG
ATTAGGCTCAAGCACTTGGAGTGACGCATACGACAGCGATGTCGGTACGGGCCCGCGCCG
ACGAACTGCTTCAGTACAAGAAGAAAGACGAAGCGACATCACCACTACATACTTACCTAG
TAATAAATATAGTACTCTAGCATCAGCGAGAGCAAGCCAAGAAATGTATAGAAACCAACC
AGGGAGAATAGAAAATTACGTACCCGGACGATCTTCTGTGATAGACAAAGAAGCTAAGCA
GTGGTGGGACGAGGTCATGGACATTTTTGATGGGCAAAACATCACAAGTACAACATCTTT
GCCTCAAGCATCGCCTAAAGAAAAAAAGGACATCACATCTGCCATTTTATCGAAATCAAA
CATGGCAAAAGCTCTTAAAGAATCAGGGTATGAATCGGACTCTACTCTCATTTTCCGACG
AAGAGAAGACACAGAAGCGCCATTGTCGCCTGCAGAGAGACGAGCTGCGTATAGAGATTT
ACAAGCAGGTGGAGAACCGCCTTTAAGAGGGTTCCGTTCTCCAGCACCGCCTCGACAAGA
AACCAACTCAGTCCCAGAACCACCTCGAAGAACACTACATGGGAGTTATTCAGATACAGA
ATCCCCTCGTCGATACGTGGAGAGTGACGTAAACATCCACTATCGTGTTCCGGTGAGACA
CGACCCCTTGCCTCTGGTACCCGAGCGCGAGCTTGCGCGCCAGCAGGCAGAACACATGAA
AAGGCTCTACAGAGAGCAAAGGAGGACAGATCG
(1293 bp)

- SilkBase 1999-2023 -