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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_SariMSG_c25273_g1_i2
Scaffold_id
NCBI non-redundant
(nr)		CCR4-NOT_transcription_complex_subunit_2_[Danaus_plexippus_plexippus]
Ontology
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0000288 P nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay
GO:0000289 P nuclear-transcribed mRNA poly(A) tail shortening
GO:0000932 C P-body
GO:0001104 F transcription coregulator activity
GO:0001226 F transcription corepressor binding
GO:0001829 P trophectodermal cell differentiation
GO:0004535 F poly(A)-specific ribonuclease activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0006417 P regulation of translation
GO:0006977 P DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest
GO:0007275 P multicellular organism development
GO:0010606 P positive regulation of cytoplasmic mRNA processing body assembly
GO:0016020 C membrane
GO:0017148 P negative regulation of translation
GO:0030014 C CCR4-NOT complex
GO:0030015 C CCR4-NOT core complex
GO:0031047 P gene silencing by RNA
GO:0033147 P negative regulation of intracellular estrogen receptor signaling pathway
GO:0090503 P RNA phosphodiester bond hydrolysis, exonucleolytic
GO:2000036 P regulation of stem cell population maintenance
Transcript
Level		FPKM:20.30 TPM:12.96
ORF EntryO_SariMSG12573_complete:A_SariMSG_c25273_g1_i2
Sequence
(Nucleotide)
CTTGACAGTAAATGTGTATTGTCTATGGATAAATGTAACATAAATTTTCGTCCATTTTTA
ACAATATGGCCGTCAATTGTTTAGGGTAATGTGGCGTTCGACGAAACTCAGTGAAATTAT
AAAGATATTCAAAAGTGGCGTGAAGATGTATAAAGTTTATAACATTTTATAGCAGTGTTT
CTTATGGAGGTGGTTCTTTGTACATGTTGAGTTAGTGTAAAAATTTTTGAATGCATATAA
ATTGTCATCGAAATTGGGTAGTCAACAAACTTTTGTTTATTTTATTCAAGTGGATACCAT
ATTTTCTAGCTGAGAGTACTCGATTATGAACCATCAATAATTGTTATAAATAGTGCAACA
AGGACTGACTTCTACATATTAGGTTATGGCAAACTTGAATTTTCAGCAAGCATCTAGAAG
CCTAACGAGCGGTGGGGTGGGCGGTGTTGGAGGTGTGGGTGGACGTGTGAGTTCAGGGCT
GGTGACCGGGGTCTCTGGTCATGTGACCCCAACCTTTGGCGGCGCGCTGTCGCCTGGCCG
CAGCTCGACAGCGATGCCGGGTGGCGCTCCGCCGTCAATGGCGTCGCGTGCTACACTCTT
TGGACAGCGTGCTTTTGCCGATCGGAGGGTGCAAATGCCTACAACCCTGTCGCAGCCCAA
CTCTAATTCTATGTCAAGTATAAGCAACTTATCTCGGTTTAACACAAGTAACAATTACCA
CTCAGTCTTTGGAGAGGGTGGTGATACGTCAACACCGCCATTGTTGGACCTTAGCGAGTT
CCCCTCGTTAACGGCTCGAGGCGCTGGGGACCAGGCGCCCACAGCCGCACCGCCGCCGCC
CGGCTCTAAACCTTATGTGGGTATGGTGAAGCAGCCGACGTCCGAGCAGTCCGAGTTCAC
GATGTCGTCTGAGGACTTCCCCGCGTTACCCGGCACGTCGACGGGCGTCGCCCCGATCGG
GCCTCCCCCGCCGCCCGACCCGACGCTCACGCCCGACAAGCCGCGCAAGGGAATACAGAC
ATTACCCGATGGTAAGGTAACGAATATACCGGAGACAATGATACCGAACCAGTTCGGTAT
AGTTGGACTGCTGACGTTCATCCGTGCAGCGGAATCGGATCCGAGCCTAGTGTCGCTGGC
GCTGGGGCAAGACCTCACTGCGCTCGGGTTGAATTTAAATTCACCGGACAATCTGTATTT
AACTTTCGCCGGACCGTGGGCGGATATGCCTTGCAGACCACAAGACATGGACTACCACGT
TCCGCCTGAATATCTAATAAATGGTTCAATTAGGGAAAAGCTAGCGCCACTACGACTGAG
TCGATATAAGGAAGATCTATTATTTTATTTGTTCTATTGTTTCGTCGGCGACGTGCTACA
GATAGCAGCCGCAGCGGAACTATATAATCGCGAATGGCGGTATCACATGGAGGAGAAGGT
GTGGATCTCTCAAGCTCCCGGGATGCCGATGGTGGAGAAGACGTCCACATATGAACGCGG
TACCTATTACTTCTTCGACGCACACAATTGGCGTAAAGTGGCGAAAGAATTCCATCTAGA
TTATAGCAAGTTGGAGGGGCGGCCGCAGTTGCCGCCGCATGCGCTCACGTAGCGACCCCG
CCGCGCGTGCGCTCACACACCTATTGTAGTTTTGTTATATAAAAAGTACAAGTTTAAAAC
CGG
(1683 bp)

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