SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_SariMSG_c25239_g1_i2
Scaffold_id
NCBI non-redundant
(nr)		geranylgeranyl_pyrophosphate_synthase_isoform_X1_[Bombyx_mori]
Ontology
GO:0004161 F dimethylallyltranstransferase activity
GO:0004311 F farnesyltranstransferase activity
GO:0004337 F geranyltranstransferase activity
GO:0005737 C cytoplasm
GO:0006720 P isoprenoid metabolic process
GO:0008299 P isoprenoid biosynthetic process
GO:0016740 F transferase activity
GO:0033384 P geranyl diphosphate biosynthetic process
GO:0033386 P geranylgeranyl diphosphate biosynthetic process
GO:0045337 P farnesyl diphosphate biosynthetic process
GO:0046872 F metal ion binding
Transcript
Level		FPKM:7.20 TPM:4.59
ORF EntryO_SariMSG12514_5prime_partial:A_SariMSG_c25239_g1_i2
Sequence
(Nucleotide)
CTGTAATCAGTTGGGTTTACAAATGTCAGTGTCAAGTAAATACTGTGAGGGAAATCGATT
TTCTTGTAATTTTATGGACAATATTTTACTTGAATTAAACACGTTAGAAATGTCTGAAAT
TATAAATAAGAGCAACGAAAAATATCCAGACGACAAAATCCTAATGCCATACACTTACAT
CCAACAAGTACCGGGCAAACAAATTCGCGCGAAACTCGCATCAGCTTTCAACTATTGGTT
AAAGATATCCGATGAGAAACTTCGAGCCGTCGGTGAAATTGTCCAGATGCTGCACAACTC
TAGCTTACTGATCGATGATATTCAAGATAACAGCATTCTGAGACGGGGAATCCCGGTGGC
CCATTCGATTTATGGGGTCGCTAGCACAATCAACGCTGCTAATTATGCGATGATAATCGC
CCTACAGAAAACTTTGGAATTAGGGCATCCTATGGCTATAACAGTATGCACTGAACAGCT
TTTAGAACTGCATCGAGGTCAGGGTATGGAGATATATTGGCGTGACAATTTCCAATGTCC
CTCCGAAGAAGAATACAAGGATATGACAATCAAAAAGACCGGTGGCCTGTTCATGCTAGC
CATACGTTTGATGCAATTATTTAGTGAAAACAAATCGGACTTCAGCAAAATAACCGCCAT
CCTCGGACTGTACTTTCAAATCAGAGACGACTACTGCAACCTCACTGAGAAAGAGTACAC
TGAAAACAAGAGTTACTGTGAAGATCTTACAGAGGGTAAATTCAGTTTCCTAATCATACA
CGCCATCAGGAATCAAGAGGGAGACAACCAAGTGCTTCACATATTAAGGCAGAGGACTCG
TGACGTTGAAGTGAAGCGATACTGCGTCACATTGCTGGAGAAACTTGGCAGTTTTCAATA
TACACGACAGATATTGCAAGCACTCGACCAGGAGGCCAGGAATGAGATTATAAGATTGGG
AGGTAACCCACTTTTAGAAGCTCTTTTGGACGATCTCCTGACTTGGCGCATCGAGGGAAA
GGATTCCGTAGTTGAGACAAACCACGTTTAGGCATTAAGACAATAAAATATTAATAAAAT
GTACATCTCTCAGATCGGAAGAGCGTCGT
(1109 bp)

- SilkBase 1999-2023 -