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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_SariMSG_c24809_g1_i2
Scaffold_id
NCBI non-redundant
(nr)		protein_CASC3_isoform_X3_[Bombyx_mori]
Ontology
GO:0000184 P nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006397 P mRNA processing
GO:0006417 P regulation of translation
GO:0006810 P transport
GO:0008380 P RNA splicing
GO:0016070 P RNA metabolic process
GO:0016607 C nuclear speck
GO:0035145 C exon-exon junction complex
GO:0048471 C perinuclear region of cytoplasm
GO:0051028 P mRNA transport
Transcript
Level		FPKM:5.90 TPM:3.76
ORF EntryO_SariMSG11764_5prime_partial:A_SariMSG_c24809_g1_i2
Sequence
(Nucleotide)
GCTTTGATCTTTCATTTGATTTTTGCTAAAACAAGAAGGGATTTTTCTTGTTAGCCAACG
AAAACGGGTGAAACCAACGCCACCTTGTGTTTTCAAATAATACATAATTTAAGCTATCAA
TCTGGAAGTTTTACAAGTGACCAGGGAGGACGCCAATATGACGTCCGTGGCTAGAACACG
GGAACAAGATGATTCGGGAGAATATTCGGACGCATCGCAAGATATTGAGAATAGTAACTC
TTTGAACGATGGTCAGCAGGAGTCGGAATATGACTCGCAAGCCAGCGAGTCTGACCGCTC
CGACAGAGATCCTGAAAATCAGGAAACGGAACGTCGAGTAGACGATGACGAGGATCGGAG
TAACCCTCAATATATACCGAAAAGGGGTACCTTCTATGAACATGACGACCGTACGGCAGC
CAGCGGTGAGGATACCACAAACACGACATCAGAGACTGCATCTGAGAAAAAGGAATCTAG
TGACACTCCCGCTGAGAGACGCCGTCCGCCGCGCAAGTCTGATATCGTTAACAAATGGTC
TCACGATAAATATATTGAGAACGAACAGATACCAAAAACACGCGACGAATTGGTGAATAT
TTATGGTTATGATATCAGGAATGAAGAAGCGCCCCCACATGCCAGACGGAATAGAAGATA
CGGGAGAGGTCCAAATAAATATACAAGAACTTGGGAAGACGAGGAAGCGTACAGGCGACA
GAACGCTGCACAACAACCCCGGAAACCACCAAACCCTGAAGACTTCCCGGAGCTAGAAGC
TTCTGCCAAGAAACCGGCTAGAAAACCCCGCGTCCAGCGGCCGCGTTCTAAATCGCAGCC
CGCGTCCAACGACTCTGCTGACAGCGGGCCGCAGCTCCGTCGCAACGCGTCGATCAAAAC
GCCCAGACCCAAACCCGTGGCTAGACCTGCCCCGGTTAAGAGTACAGCACCGAAGAACTC
ACCGAAGCCCCCGGAGAAGTTACCGCCTATCGAGAATCTCACTATAACGACAAACTTGAA
TAACAGTCAAGGTCAGAGTCAGCGGAAGGTGAGCTCGAGCGTCGCGCAGCAGAGGCCCGT
GCCCACGGACTTCGCCAGGAGGAAGCCCAACAACCACACGCAGCAGCAACAGAACAATCC
GGTGCTGAATAATAAACAGTCGCAGTCGCAACAACAGTCACAACAGAAACCGCAACAAAA
CCAACAACAGCAGCAACCGGCTGAAGGACGCGGTGGAAGCAAACGCTACAGTAGCCTGCG
ACAACGGCCCCTTGGTGACTCTTATACGCCGCAACCGCAACCGCAACCGCAGCCGCAACA
GCAACAGCAGCCGCAGCAACAACCGCAACAACAACAACCACCGCTTCAACAACAACAGCA
ACCACTCCAACAACAACAGCAACCTCAGCAACAACCGCAACCGCACAGATATCATGCCGG
GACAGCAAGTGAATATCCCAGCGGTGGGAACAAGGTCCAGCAGCCTGCCCCAAACCCCGC
TTCAACAACAACAGCAACCACTCCAACAACAACAGCAACCTCAGCAACAACCGCAACCGC
ACAGATATCATGCCGGGACAGCAAGTGAATATCCCAGCGGTGGGAACAAGGTCCAGCAGC
CTGCCCCAAACC
(1632 bp)

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