SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_SariMSG_c24698_g1_i4
Scaffold_id
NCBI non-redundant
(nr)		exosome_component_10_[Helicoverpa_armigera]
Ontology
GO:0000166 F nucleotide binding
GO:0000176 C nuclear exosome (RNase complex)
GO:0000178 C exosome (RNase complex)
GO:0000184 P nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0000460 P maturation of 5.8S rRNA
GO:0000956 P nuclear-transcribed mRNA catabolic process
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003824 F catalytic activity
GO:0004518 F nuclease activity
GO:0004527 F exonuclease activity
GO:0004532 F exoribonuclease activity
GO:0005622 C intracellular anatomical structure
GO:0005634 C nucleus
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0006139 P nucleobase-containing compound metabolic process
GO:0006364 P rRNA processing
GO:0006396 P RNA processing
GO:0008408 F 3'-5' exonuclease activity
GO:0009048 P dosage compensation by inactivation of X chromosome
GO:0016020 C membrane
GO:0016787 F hydrolase activity
GO:0035327 C euchromatin
GO:0044237 P cellular metabolic process
GO:0044822 F RNA binding
GO:0071028 P nuclear mRNA surveillance
GO:0071034 P CUT catabolic process
GO:0071035 P nuclear polyadenylation-dependent rRNA catabolic process
GO:0071044 P histone mRNA catabolic process
GO:0071048 P nuclear mRNA surveillance
GO:0090503 P RNA phosphodiester bond hydrolysis, exonucleolytic
Transcript
Level		FPKM:7.98 TPM:5.10
ORF EntryO_SariMSG11585_complete:A_SariMSG_c24698_g1_i4
Sequence
(Nucleotide)
TTCAATTCTAGCGCCCACGATGATGGTGTTCTGTGTTATTTTCATTTAGTGTTAGTTTGA
GTATTTAAAATGAGTATAAAATCAGAACTGAATCCCGAGGCTCCAGAATTTTATCCGAGC
ACAACGTCCTTGGATCAGTTGTTCCAGGTCGGATATGCTAAAGTTAGTAAAGTTGTACGA
TCTTCGCACGTTTTGCCATTTGGAACTTCTTTTAACATTTTCAAAACATTCACTGATTTT
AACGTAGTGAGTTCCAATTTATGTAAAAATGTTATTGAACAATCCAATCAAATACTCTCC
AGTGGTTTCAATGGTTCAAGGCTTAAAGGAAATGATAATGAGTACAACATAGAGAAGATC
ATTGATATAAATGACGATACATTAGAAAGGGTGAACATCAATATCGACACTACTGCTCGT
GTAAATAATCCAAACCAGAAGGATATGCACGGTGTCCAGTTACCTATTATATCACAAATA
AAGGAAGGTTCTACGACACTCTTGGCTGCTAAAGACATTAAACGGCCACAAATGTTTTTC
AAAGACACCATAGATAATTCGGAAAACTTATGGGTGCCAAAAATTTCGGACAAACCGAAC
AGTATTACACCTCTTGCCTTGAAAATATTGTACGATAATTATGGTCGAGCTATAGGATAC
GAACATCCATACTTGGCGGAACTGACATTGTACAATCCCTGCCCAGAATTTATCGAACCA
GATTCGGAACCACCAGTATTCCCACTTTCCCTAGAGGAAACGAAATTTACTTATGTTGAC
ACAGAGGAACAGTTAGATGAACTCATCGAGCATCTTTACTGCGCAAATGAATTATCCATA
GACTTGGAACATCATTCCTATAGGACTTATCAAGGAATAACATGCCTCATGCAAATTTCA
ACAATTGAAGGAGGTGACTTTATTATAGATACTTTGGCTATTAGGGAACACATTCACAAA
TTGAATGTCATATTAACAGATCCTAAAAAATTAAAAGTGTTCCATGGTGCTGATAGGGAC
GTATTATGGCTGCAACGTGATTTTGGCGTTTACTTAGTTGGTATGTTTGACACCTACCGA
GCAGCCAAAGCCCTCAGACTTTCCGGGCTATCGCTTAAATTTTTATTACAAAGATATTGT
CAAATTGATGTTGATAAAAGACATCGCTTGGCTGATTGGCGTATGCGTCCCCTCCCCGAT
GTGTTGATATCTTACGCACGTACGGACACGCACTACCTTCTGTACGTGTGGCATATTATT
AAAAGCGAACTGTTGAAAGTCGGCGGCGAGCAGCTCCTACTGGAAGTATTTAAAAGCAGC
CAAAAAGTTTGTGGATACACGTATAATAAGGAAGTGTTTAACGAATCGAGTCACATTTCA
CTCTATATACGTTCGAAGCAGAAATTCAGTATTCAGCAGATGACTGCCTTAAAAATGCTT
TACAAGTGGAGAGATGAAAACGCCCGTCGCGAAGATGAAAGTATCCAGTATTTATTTACA
AACCGTGTATTGTTGAAGTTGGCAAAAGATCTGCCATGTGACATGCATACAATCTTAAAC
TATTGCAATATTATGCCGCCATTTATTAAGTCAAATGTCCTCACCATACACAAAATGATT
CTATCTTGTTTAGAGTTGCCAAATCAACCATACGTGCATATTTCATCACCTGATGACAGT
TTAGAGATGATGAACCCACAAAGCAAAATCCCGTCATCATCCATTGCATATGATAAGACC
GACAGCTCGAGTGAAGGTGAAAATCATGCTGTACCAAACGATAATATCGATTTATTGGAA
TCAGAAGAAAATCCTCCTGATGTACCACCATTTAAAAACGATACTGAGATAAATTGCACG
ATGGTGGTGTCCAATTTGAATGCCGAAGCTGAAGTATTCATTCCACCATATGACAGATAC
AGAAAATACAGATGTTTGATTCAGATGAAAGAAATAAATGACTTTAAGGAGAGAGAAGCT
GAAAATGAGTTAGTTCGTATCGAAGTCATTGAAAGACCCCAACAGGCCCAAACGCAAATC
GCTAATGATGATAATGTAGCGACGCCATCGACTAGCAATGCGGTTTTTGCTTTGCCTGGG
AACACGTTACAGCGTAAAAGGAAACTGCCATCGAATCAGTAAAATCTGTCATCTGTCAAA
AATAAATGTTTTTCCATTCCCTTTTTTCACAGCACAAAACAGCTTTTTTTTTTCTTCGTG
AATTATTAATTAAGCATGGATTACCTTTTCTTAAACTTTTTCCTTTTTTTATATTACCTA
TTGTA
(2285 bp)

- SilkBase 1999-2023 -