SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_SariMSG_c24299_g1_i2
Scaffold_id
NCBI non-redundant
(nr)		PREDICTED:_putative_pre-mRNA-splicing_factor_ATP-dependent_RNA_helicase_PRP1_[Papilio_xuthus]
Ontology
GO:0000166 F nucleotide binding
GO:0000398 P mRNA splicing, via spliceosome
GO:0003676 F nucleic acid binding
GO:0003725 F double-stranded RNA binding
GO:0004004 F RNA helicase activity
GO:0004386 F helicase activity
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005681 C spliceosomal complex
GO:0005689 C U12-type spliceosomal complex
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0006397 P mRNA processing
GO:0008026 F helicase activity
GO:0008380 P RNA splicing
GO:0009636 P response to toxic substance
GO:0016787 F hydrolase activity
GO:0043279 P response to alkaloid
GO:0044822 F RNA binding
GO:0071008 C U2-type post-mRNA release spliceosomal complex
Transcript
Level		FPKM:2.20 TPM:1.40
ORF EntryO_SariMSG10979_complete:A_SariMSG_c24299_g1_i2
Sequence
(Nucleotide)
CGTAGAGACGCCATTTTGTCGGTTGTGTAAATTTATTTAGGAAATTCATAAAATATCTTT
ATTACTGTGCAAATTTTGTTATATGTTGTGAAATATAATAATGTCCAAACGACGTATCGA
AGTAATGGATCCGTTTATCAAGAAAAAGAGGGAGGAGAAAGCGGCAGCTGCAGCAAAATC
AGGTGGCAGTGGGGAATCTTCTGATAGTTCCCTAGCCACATTGAGTACAAGCATGCCAAC
GGCAACCAGTACTCCTGGCCAGAATCCATTTACAGGTCTCCCACATTCCCAACGTTACCA
CGAGCTTCTGAGACGGCGCTTAGGCCTGCCTGTTTGGGAGTACAAAAGCGACTTCATGAG
ACTCCTGAACACGCACCAGTGCGTTGTTCTCGTCGGTGAAACCGGTTCCGGGAAAACCAC
GCAAATACCACAGTGGTCAGTCGAATTTGCCGCTGTGACTTTGGGCAAGTCAAAGGGAGT
CGCCTGCACTCAACCCAGGCGAGTGGCAGCCATGTCCGTTGCACAGAGAGTTGCTGAAGA
AATGGACGTCGCCCTAGGCCAGCAAGTAGGGTACAGCATTCGTTTTGAAGACTGCTCAGG
CCCTCAAACTGTTCTCAAGTATATGACAGACGGTATGTTACTGCGTGAGGCCATGTCTGA
CCCGATGCTTGAACAATACAGGGTAATATTGCTGGATGAGGCTCACGAGAGAACATTAGC
GACAGACATCCTCATGGGTGTCTTAAAGGAGGTCATAAAGCAGCGTTCAGATTTGAAGCT
GGTTATTATGTCTGCAACCTTGGATGCTGGGAAATTTCAGCAGTATTTCGATAATGCACC
ATTGATGAACATCCCCGGTAGGACGCATCCAGTGGAAATTTTCTACACTCCGCAACCGGA
AAGGGATTATTTGGAAGCTGCTATTAGGACTGTGTCGCAAATTCATGTTTGCGAGGAAAT
TACCGGAGACATTCTCCTGTTTCTGACAGGTCAGGAGGAGATAGAAGACGCATGCAAGAG
GATAAAGAGGGAGATTGACAATTTTGGACCAGACGCCGGGGAGCTGAAGTGTATCCCCCT
TTATTCGACTCTCCCGCCGAATCTTCAGCAGAGGATTTTCGAGCCAGCACCGCCGAATAG
ACCGAACGGTGCGATTGGGAGGAAAGTGGTCGTTTCGACGAACATAGCGGAAACTTCTTT
GACGATAGATGGTGTTGTGTTTGTGATTGACCCGGGTTTCGCGAAGCAGAAGGTGTACAA
CCCTCGTATAAGGGTTGAATCGTTATTGGTGTCGCCGATAAGTAAAGCGTCCGCGCAGCA
AAGGGCGGGTCGCGCGGGGAGAACACGTCCCGGGAAATGCTTTAGACTCTACACTGAAAA
AGCTTATAAAAATGAGATGCAGGATAACACTTACCCAGAAATTTTGAGGTGTACCAAGCG
AGTAGAATATGTGAACACAACCGTCTAACGGCACGTCCGCATTGCCCGTTGCAGATCGAA
TTTAGGATCTGTAGTTTTGCAGTTGAAAAAACTGGGCATCGATGATCTCGTCCATTTCGA
CTTCATGGACCCGCCGGCGCCGGAGACGCTGATGAGGGCGCTCGAACTGCTCAACTATCT
CGCTGCACTCGACGATGACGGCAACCTGACGGACCTCGGCGCCGTGATGGCGGAGTTCCC
CCTCGACCCTCAGCTCGCGAAGATGCTGATAGCCAGCTGCAATCACAACTGTTCCAACGA
GATACTCTCCATCACCGCAATGCTCTCAGTGCCGCAATGTTTCGTGAGGCCAAACGAGGC
CAGGAAAGCGGCCGACGAGGCCAAGATGCGTTTCGCTCACATCGACGGTGACCATCTCAC
GCTGCTCAACGTCTATCACGCATTCAAACAGAACATGGAAGATCCGCATTGGTGTTATGA
TAATTTCATCAACTATAGATCTTTGAAGTCGGGTGATAACGTGCGGCAGCAGCTCAGCAG
GATTATGGACAGGTTCAATTTGAAGAGAACTAGCACCGAATTCACGAGTAAAGACTATTA
CATTAATATAAGGAAAGCGCTCGTCAATGGATTCTTTATGCAGGTGGCACATTTGGAACG
GACGGGACATTACCTGACAGTGAAGGACAACCAGGTGGTGCAGCTTCACCCCTCCACCTG
CCTCGACCACAAACCCGACTGGGTCATTTACAATGAATTCGTTCTAACTACTAAGAATTA
CATAAGGACCGTTACGGATATCAAACCGGAATGGCTGCTGAAGATAGCGCCGCAGTACTA
CGAGCTGAACAACTTCCCACCCTGTGAGGCTCGGAGACAGCTCGAGCTGCTCCAGGCCAG
GCTCGATTCTAAGGTTTACCAGGAGGGATTCTAATCTAATACACGTGAGATCGGAAGAGC
GTCGTG
(2406 bp)

- SilkBase 1999-2023 -