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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_SariMSG_c24297_g1_i1
Scaffold_id
NCBI non-redundant
(nr)		exosome_complex_component_RRP43-like_[Helicoverpa_armigera]
Ontology
GO:0000176 C nuclear exosome (RNase complex)
GO:0000177 C cytoplasmic exosome (RNase complex)
GO:0000178 C exosome (RNase complex)
GO:0000467 P exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0006364 P rRNA processing
GO:0017091 F mRNA 3'-UTR AU-rich region binding
GO:0034427 P nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5'
GO:0034473 P U1 snRNA 3'-end processing
GO:0034475 P U4 snRNA 3'-end processing
GO:0034476 P U5 snRNA 3'-end processing
GO:0043928 P exonucleolytic catabolism of deadenylated mRNA
GO:0071028 P nuclear mRNA surveillance
GO:0071035 P nuclear polyadenylation-dependent rRNA catabolic process
GO:0071038 P nuclear polyadenylation-dependent tRNA catabolic process
GO:0071042 P nuclear polyadenylation-dependent mRNA catabolic process
Transcript
Level		FPKM:8.59 TPM:5.48
ORF EntryO_SariMSG10971_3prime_partial:A_SariMSG_c24297_g1_i1
Sequence
(Nucleotide)
GTAGGTGGCAACACTGTATAACCTGCAAAGCAGAAATAATAAAACTGCAAAGAAAATATA
AATGTATAAAACAATTTGTTATTCTTTTCAAATTGTATTTTGAAGATACCAATTTATGAG
TTTATAAAAGCATATGAATAAAACTTGATCTAATATGGCTGAAATTTATAAGATCATTCA
TCCAGTTAAACACTTTAATGACTATATATCGCTGAACGTACGTCCCGACGGTAGAAAATT
TTTTGAACAACGTAATATTAAATTAAATGTTGATTCCATTAAAACGGCTGAAGCGTCTGC
GGTGGTCAAGTGTGGTAATACTGCTGTCATCTGTGGTATTAAACTGGAACTGGCAACACC
AAAAGCTGAAGAACCGAATGTTGGTTTTTTGGTGACAAATGTTGAACTACCACCACTCTG
CTCTTCTAGATTTAAACCGGGACCCCCGTCTGATTATTCCCAAGTAACCAGCAAACTAGT
GTCAGATATAGTGGTCAACTCAAAGTGTATCAATTTAGAGGATTTGTGCATAGTCCCAGA
TAAACTTTCCTGGGTCCTTTACTGCGACATAGTCTGTATAGACAATGATGGTAGTTTAGT
AGATGCCTGTATTATTTCATTGATGGCAAGCTTAAGATCATTGTCGCTTCCATCAGTGAC
ATTTGATCCTGAAACTGAGGAAATTGAAGTAGACACAAATAAAAGACTAAGGCTGAAAAT
TCACAAATCACCAGTTGTAACCAGTTTTGCATTGTACAAACACAATGACAGAAATGTCCT
GTTAACTGACCCATCGTTCCATGACGAAGAAATGTGTGGAGGTTTAGGTGCCAATTTAAT
AGTGAGTTTCAATGATGATTCTATTTGTAGTTTACAAAAGTTTGGTGGCTGTAACTTCCC
ATCTGACATTCAAAATGAAGCCTTAAAGATAGCTGAAGAAAGATATAGAGTTGTAAAGAA
AGTAATTGATGTTTGCTTAAAAACTTATGAAGAAACTAGTAC
(1002 bp)

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