SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_SariMSG_c23666_g1_i1
Scaffold_id
NCBI non-redundant
(nr)		poly(A)_RNA_polymerase_cid11-like_[Helicoverpa_armigera]
Ontology
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003730 F mRNA 3'-UTR binding
GO:0004652 F polynucleotide adenylyltransferase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005730 C nucleolus
GO:0005847 C mRNA cleavage and polyadenylation specificity factor complex
GO:0006378 P mRNA polyadenylation
GO:0006397 P mRNA processing
GO:0008270 F zinc ion binding
GO:0016180 P snRNA processing
GO:0016607 C nuclear speck
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0046872 F metal ion binding
GO:0050265 F RNA uridylyltransferase activity
GO:0098789 P pre-mRNA cleavage required for polyadenylation
Transcript
Level		FPKM:5.34 TPM:3.41
ORF EntryO_SariMSG10047_3prime_partial:A_SariMSG_c23666_g1_i1
Sequence
(Nucleotide)
CGGCAAACAATACAGATCTGTGACTTTATAAAAGAAATGTTAAAAGTTTTTATATAGTTA
TTGCATGTTAATATGGATTCACAAGATATATTAGATACATCAAAGCTCTCCTTGAGGGGT
AGTTTTGAAGAGCAAGTTAATGATTTATTGAAATGTATAAGACTCACTAGATGGGAGGTT
GATAATTTAGTGAACCTATTTCATGATTTACTGATGGTGTTGAGGAATGTCTGGCCGGAT
TGCCGAGTGACTCCATTCGGTTCAATAGTGACAGGTTTAGGAATAAAAACAAGTGATGTA
GACATATATGTAGAAAATTGGTTCAACCAACATCCAGTCGACTGTGTGTTAAGAGCGAAA
CAAGAACTTTATAAATACCCTAATATCTTCAGTGAATTATTTGCCATAACAACAGCGAAA
GTACCTATAGTGAAATTCTTTCATGGACCAACGAACCGTTACAGTGATGTTAATTTCTCA
AGTGAGGCCGGTGTCAGGAACAGTGATCTTATTGCGTGCTTACTAAAATTGGACATTAGG
GTGTTAAATTTAGCGATCATCGTCAAATATTGGTCGAAAGTTCACAAACTTACCGGAACA
AATTTGTTGCCCAACTATGCGTTGACACTGTTGGTGTTGTTCTATTTGCAACAGAAATCG
ATTCTGCCTCCGGTGCATTATTCACAGAGGAACATTGTACCGTATGTAGTGAATAATTGG
AATACGGCATTCGATATGACCTGTATACCGGAGACCAGTAACCAG
(765 bp)

- SilkBase 1999-2023 -