SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_SariMSG_c12019_g1_i1
Scaffold_id
NCBI non-redundant
(nr)		PREDICTED:_transcription_initiation_factor_IIB_isoform_X1_[Papilio_xuthus]
Ontology
GO:0001174 P transcriptional start site selection at RNA polymerase II promoter
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006352 P DNA-templated transcription, initiation
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0006367 P transcription initiation from RNA polymerase II promoter
GO:0008134 F transcription factor binding
GO:0008270 F zinc ion binding
GO:0017025 F TBP-class protein binding
GO:0046872 F metal ion binding
GO:0051101 P regulation of DNA binding
GO:0097550 C transcription preinitiation complex
Transcript
Level		FPKM:3.28 TPM:2.10
ORF EntryO_SariMSG2585_3prime_partial:A_SariMSG_c12019_g1_i1
Sequence
(Nucleotide)
CGAGCACGTCGAGGTCTGTTTTCTTTATTTATTTTATTATAGTATTGAATAACTTGGTGC
TTTAACACTTATTTATTCCTACGAAAAATATTTTTTTTGCATTATGTTGCAATGGAGACT
AACAAGGTGGTGTGCTACGCGCATCCAGACGCACCTCTCATTGAGGATTACAGAGCTGGT
GACATGATATGTTCAGAATGCGGACTGGTAGTTGGTGATAGAGTTATTGATGTTGGTTCA
GAATGGAGAACATTCAGCAATGAAAAATCTGGTGTTGATCCCTCTCGTGTTGGTGGACCA
GAGAATCCATTATTATCAGGAGGTGATCTCTCTACAATCATTGGTCCAGGGAGGGGTGAT
GCATCATTTGACAGTTTTGGTGTCTCGAAATACCAGAACAGGAGGAATATAAGCAGTACT
GATAGGGCTCTAATTAATGCATTCCGTGAAATAAACACAATGGCTGATCGTATCAACTTA
CCTAAAACTATTGTTGACAGAGCTAATAATTTATTTAAACAGGTACACGACGGTAAAAAT
CTAAAGGGAAGGGCGAACGACGCGATCGCTTCCGCGTGCCTCTATATAGCTTGCCGTCAA
GAAGGTGTACCGCGTACCTTCAAGGAGATATGTGCTGTCAGCAAAATCAGTAAAAAGGAG
ATCGGGCGATGTTTCAAATTGATCCTGAAAGCTCTCGAAACTTCTGTGGATCTCATCACG
ACCGCAGACTTCATGTCCAGGTTCTGTTCGAACTTGGGTCTGCCTAATTCCGTTCAGCGC
GCGGCGACGCACATCGCTAGGAAAGCTGGGGAGTTGGACATAGTGTCTGGCAGAAGTCCT
ATCTCGGTGGCTGCCGCTGCCATTTATATGGCTTCACAGGCGTCGGAGGACAAACGAAGC
CAGAAAGAGATAGGCGATATAGCCGGTGTCGCTGACGTCACTATCCGTCAGTCGTACAAA
CTGATGTACCCGTTCGCTGCGAAACTGTTCCCAGAAGACTTCAAATTCGTAACACCGATC
GAGTTCCTGCCGCAG
(1035 bp)

- SilkBase 1999-2023 -