SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_SariMSG_c11111_g1_i1
Scaffold_id
NCBI non-redundant
(nr)		probable_ATP-dependent_RNA_helicase_DDX20_[Bombyx_mori]
Ontology
GO:0000166 F nucleotide binding
GO:0000387 P spliceosomal snRNP assembly
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0004004 F RNA helicase activity
GO:0004386 F helicase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0010501 P RNA secondary structure unwinding
GO:0016787 F hydrolase activity
GO:0032797 C SMN complex
GO:0034719 C SMN-Sm protein complex
Transcript
Level		FPKM:2.63 TPM:1.68
ORF EntryO_SariMSG2178_internal:A_SariMSG_c11111_g1_i1
Sequence
(Nucleotide)
CAATAATATTGTTAAGCAAACAGATTATAAATTTCAAGAACTTATTAAAATACTTTCTTA
TCATCAATATAAGCAATGTTTAATTTTCTGCAACTATGTGGCGAGAGTAAGAGACATACA
CAAAAGGTTAAAAAGAGAAGCATGGCCTGCTGAAGTACTGCATGGTCAACAAGAACAAAC
ACATAGGTTGAATACATTGAAATCATTGCAACAATATGAATGTAGAATACTGATATCAAC
AGATTTAGCTGCAAGAGGAATAGATGCATCAAATGTCGATTTGGTTATTAACTTTGAACC
TCCTTCTGAATGGCAAACTTACTTGCATAGAATAGGAAGGGCTGGCAGATTTGGTTCATA
TGGTATTGCAGTTACTATACTTAGTGAAGGTAAAGAAGTTAATAAATTTAAAACTACTCT
TAAAACAATGCAAATTCCAATAATCTTGCAAAATATATGGACTGATGAGAAATTTGATAT
TGAGAGCCTAGATAATGACTCGTCACAACATCATAAAGATTTTAAAAAACAAGATCCCAA
AATTACTACACTACAACATTCTAAAGATATCACAACACGTCTCTCTAAAGTGGAAGAAAA
AGATGATAATGATTTTTCAAATGTATGGGATTTATTGATTAGGG
(644 bp)

- SilkBase 1999-2023 -