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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_SariMSG_c10925_g1_i1
Scaffold_id
NCBI non-redundant
(nr)		probable_small_nuclear_ribonucleoprotein_Sm_D1_[Papilio_xuthus]
Ontology
GO:0000243 C commitment complex
GO:0000245 P spliceosomal complex assembly
GO:0000387 P spliceosomal snRNP assembly
GO:0000398 P mRNA splicing, via spliceosome
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0005681 C spliceosomal complex
GO:0005682 C U5 snRNP
GO:0005685 C U1 snRNP
GO:0005686 C U2 snRNP
GO:0005687 C U4 snRNP
GO:0005689 C U12-type spliceosomal complex
GO:0005829 C cytosol
GO:0006396 P RNA processing
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0030529 C ribonucleoprotein complex
GO:0030532 C small nuclear ribonucleoprotein complex
GO:0034715 C pICln-Sm protein complex
GO:0034719 C SMN-Sm protein complex
GO:0044822 F RNA binding
GO:0071010 C prespliceosome
GO:0071011 C precatalytic spliceosome
GO:0071013 C catalytic step 2 spliceosome
GO:0097526 C spliceosomal tri-snRNP complex
Transcript
Level		FPKM:41.42 TPM:26.44
ORF EntryO_SariMSG2117_complete:A_SariMSG_c10925_g1_i1
Sequence
(Nucleotide)
GTAAAAATTAAAAACGAAATCGCCATATTTTAATAATTTGTTTTTCGATTTTGAGGTTAT
CTGTGTGAACCGACGCCGCCTTTGTTTTCTATAAAAATTAGCCTATAAGCCAACAAAATG
AAGCTAGTAAGATTTTTGATGAAGCTCAGCCACGAAACGGTGACTATTGAGTTGAAAAAC
GGTAGCGTAGTCCACGGAACTATAACTGGTGTCGATGTCGCCATGAATACGCATCTGAAG
GCGGTAAAAGTAACTTTGAAAAATCGTGAAGAATTGCAATTGGAGACTTTGAGTATACGT
GGGAACAATATAAGATACTATTTGCTACCGGACAGTTTACCTTTAGAAACATTATTAATC
GACGATACACCAAAAGGAAGGGGTAAGCGGGAGGGCTTCCCTCGAGGCGGCGGTAGTCGC
GGTGGCCGCGGAAGGGGTCGCGGAGGTCGTGGTGGACCTAGAGGTGGCCGCGGAGGTCGT
GGTCGCGGGCGCCGGTAAACTAAACTAAATTTTAAGATGACTGTCGATATGTGTGAGGTT
ATGTTTTATTAATATTTGTGTCCTGCTACAACAGCTAAATGAGTTGTTGTTTACCATATA
ATGAGCATATATTGATTATCAACAATATAATGGTAAAAATATCGAGTGTCTATTATAAGT
GTTGAGAGTTGGGTAAATCTTTTTGTGTGTGTGGATAAAAAGGTGATTTTTACTATTTTG
TATAGGAAACGTGAAGTGGTCAGATCGGAAGAGCGTCGT
(759 bp)

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