SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_SariMSG_c103_g1_i1
Scaffold_id
NCBI non-redundant
(nr)		Retrotransposable_element_Tf2_155_kDa_protein_type_1_[Papilio_machaon]
Ontology
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003824 F catalytic activity
GO:0003887 F DNA-directed DNA polymerase activity
GO:0003964 F RNA-directed DNA polymerase activity
GO:0004190 F aspartic-type endopeptidase activity
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0004523 F RNA-DNA hybrid ribonuclease activity
GO:0005622 C intracellular anatomical structure
GO:0006278 P RNA-dependent DNA biosynthetic process
GO:0006310 P DNA recombination
GO:0006508 P proteolysis
GO:0008152 P metabolic process
GO:0008233 F peptidase activity
GO:0015074 P DNA integration
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0016787 F hydrolase activity
GO:0019012 C virion component
GO:0030430 C host cell cytoplasm
GO:0042025 C host cell nucleus
GO:0046718 P viral entry into host cell
GO:0046872 F metal ion binding
GO:0071897 P DNA biosynthetic process
GO:0075713 P establishment of integrated proviral latency
GO:0075732 P viral penetration into host nucleus
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
GO:0090502 P RNA phosphodiester bond hydrolysis, endonucleolytic
Transcript
Level		FPKM:3.30 TPM:2.11
ORF EntryO_SariMSG18_internal:A_SariMSG_c103_g1_i1
Sequence
(Nucleotide)
GTAACATCTGTTCCATATAACAAGTAGGCTGGTGAGAAGCCAGTTACCGAATGATTGGTC
TGATTGTATATCTCTACACATTCATGTGCAATTGTTGTCCATGCTCTTTTTTGTTTATCT
TCATAAATTTTGCATCTTATCTTGTTTACAAGTGTTTGATTTAGTCTTTCATTTAGACCG
TTAGAATAAGGTGCATTAACTGCTGTAAATATTATTGTTATTTGTTTGTCATTCAGAAAT
TTCTTATATTCTGTGGAGTTTATACCCGGGTACTGGTCGGTGAGGAGTATCCCAATTTCA
TCTGGTTCGGTAACCTTGTTTACCAGCTTTATAAAATCATGTGCACTCTGGGTTTTAGAT
GTAATAATAAATGCATATCTAGTGAAGTGATCGACTAAAAGATGTAGATATTTCTTCGTT
GATCTTGATCCACCAAAACCACCAATTGTGTCTATTGATACTATTTCAAAAGGTTTTCTC
GCCGGAGA
(488 bp)

- SilkBase 1999-2023 -