SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_SariMG_comp30441_c0_seq6
Scaffold_id
NCBI non-redundant
(nr)		PREDICTED:_uncharacterized_protein_LOC106142992_[Amyelois_transitella]
Ontology
GO:0000166 F nucleotide binding
GO:0002230 P positive regulation of defense response to virus by host
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0005886 C plasma membrane
GO:0006397 P mRNA processing
GO:0006915 P apoptotic process
GO:0006921 P cellular component disassembly involved in execution phase of apoptosis
GO:0008380 P RNA splicing
GO:0016607 C nuclear speck
GO:0016887 F ATP hydrolysis activity
GO:0019899 F enzyme binding
GO:0030218 P erythrocyte differentiation
GO:0030263 P apoptotic chromosome condensation
GO:0035145 C exon-exon junction complex
GO:0043065 P positive regulation of apoptotic process
GO:0044822 F RNA binding
GO:0045657 P positive regulation of monocyte differentiation
GO:0048025 P negative regulation of mRNA splicing, via spliceosome
GO:0061574 C ASAP complex
GO:0098779 P positive regulation of mitophagy in response to mitochondrial depolarization
GO:0098792 P xenophagy
Transcript
Level		FPKM:0.89 TPM:0.90
ORF EntryO_SariMG16468_complete:A_SariMG_comp30441_c0_seq6
Sequence
(Nucleotide)
GGCTGTTTGGTTTTGCCACTACAGAATAATTGAATGCGTTCGGTTTTAGAATTTGTCACA
TCGTTTAGTTTATAAAAGGTAAAGATGCGTCGTAAAAGCGAACGCGTTGTCAACAAGAAA
TCAAAAGCCTCACCGGAAAAAAATGTTGAAAATCCCAAACGTACGAAGACACGCCGTAGG
AAGCAAAGTTCTACATCAGATAATGAATCCTGTGAAGAGAAAAGCCCAGTACGTGAAAGT
GGTGTTATTATTGATCCTGAAAAAGACTTACAAGAGACTTCGAACATAAAAGATAGCCTA
GAAGAATCACAAGATCAGGTATGGCAAGTGAAAACCGCTGGAAGTTCTGGCGATGTTGGA
GAGATTCAAAAACTCAAACTTTGTTTGAAACGCCCTTCGTCTACTCCGGAGCGTGGTGAT
AAATCTCCACGAAGTAAAGGTAAGCACTCACGTGCAGCCAGTTCCAGTGACACACCTAGC
GTAGAGTCTGTTGAAGATAAAAGAAAAAAACGTCGTTCCAGAAAGGCTTCTCATGAAGCT
AAAAATGATAAGAGTGACGATTCACAAACTGAACAGCAAAATGAAATTGAAACTGTTAAG
CCAGTAAGTACTGCTCAAGAGAATAATGAAGTTACTCAAAGTGGAATGGAACAATCTTCA
GAGGCCCCTGTGTCTACAACAAATGAGGAGGATGTTACTGATGAGTCGGGACATTCAGGG
TCAAATGATGAAAAAAAAGATGTTGTTGCTGATGTTGAATGTAAATCAGATGCTGATACG
ACTGTTGTTTCACCAGAAGTTGAAACCATAGTTGTATCTTCAAACGAAGAAGTTATTTTA
CCTAATACAGAAGAGTCCAAGGATGAATCTGTTATGATTGAAAAAAATAGTCCAACTCGC
AAAAGAAGCGCATCAGTTGATAAGTCTGAAATACTAGAACTACATCCAGATGATACAAAG
ATAGAAAGTTCTGATAATGAGACAAGTAAACAACAAGAGGAAGAGAGCAAAGAGGAGTCT
GTCACGGATCAACAAATAGAGGTAAGTATAAATCAAGAACAAAATATCAATAAACAAACA
GAGGTGGAAAATAATGAGGACATTAATAAGTCTATTAATGAATCTGGTGTTCTAGAGAAT
GAAAATGTTCAAAAGGAAATGAGACAAATAACAGATTCTGATAATGAACATAAAATAGAG
AATAATGATGAGCAGAAGGAACCATCTGAAAAGGAGACACATCAAAATAAAGAAACTGAG
CACTCTCATTCCACAAAACTTACAGAAGAACACATTGTACAAAATGGTCAAACAGCAACA
ACAGCTGTGAATAGAAAACGTCGTTGGGGTTCCAGACCAACAAAACTAACGACACAGAAA
TCAATTACAATTTCCACTGATGTATTAAAAGATATAATACCAGATGTTAAACCAGTTGAA
TTTGAAGAAGTTATCGAAGAAAAGAAACATAGAAGAGTAGAAGTTCCAGAAAAAGTTGAA
AGACCATTATTACCTAAAATTGTTATTGATAATACGGAGAATGTGGAATATAAGAGAAAA
GAACATGAGAAAGAAGTTAAAGAGAAAGAAATTAAGATTAAAGAATCTTTAGCTTCCAAG
AGAAAAATATCTATTATAAAAGAAAATGACAGCATAATCTCCAGGCCTCCAAGTCCTCCA
AAAAATAAACAATCTTGTATATTATATATAACTAATCTAGTTAGGCCATTCACATCAATA
CAATTAAAAAACTTATTACTGAGGACAGGAAGGATAGTTGAGAATGGTTTTTGGATGGAC
AAAATCAAATCTAAATGTTTTGTTCAATATGAAAATGAAGATCAAGCTGTTGAAACAAGG
CATGCATTGCACGGTGTCAAATGGCCAGTTTCAAATCCCAAAACATTACAAGTCGACTTC
TCCACTCAAGAAGCATTCGACAAAGCAAAATTAAATGTAGATGGAGATAATGCTCAAGTT
TCAGCTTTGTCTGGAACAGTGGAGGACTGGCTCCGTGAACTAGACTCTAAGAAAGAAAGA
GGTGAAATGGACAAATCATGGGAGCGAAAAGCCGCAATGCGTGAATGGGATGTTGGAAAA
AATGAGAAAGACAAGGAAAAAGACAAGTTAAGACATGATGAACGACATTTGGAGAAGAGA
AGACATCGCTCAATTGAAAGAAGTCCTGAACCAGCAAAAAAATTCAAGAAGAAAGAAGAG
GAAGCACCCGCGAAACTACTTGACGATTTGTTTAGGAAGACTAAAGCCACTCCTTGCATA
TACTGGCTGCCGCTCTCAGCCGAAACGATTGCGGTGAAGGAGGAACAGAGACGGCAACAC
ATGGCTGAATACGAGCGACGAATGCAGGAACAACGGCGCACACATCGACGTCATTGACAC
GACAAGCACGCTTGGAGGATATCCAATGATTTAATTCATCGTCGGGGTACCGCGATCATT
TGATCGTACGCAGAGGAGATGAATGAATATGCGCTGTTTGGAGATGCAGCTGCGGACTAC
ACTGACATTATCTGCCCTTTATCGTCGATGTGTAGCCATTATGGAGTGATTACCGCCACC
CTATTCTGCCAAACGTTTATATATGCTGTTCAAAAATGTTCTACAAAATTGAGCAAGCTA
TGTTTTTATATGTTCGTCGACATCTCAAAACAACTCTCAAATGTATTGGTGGAAATGGAA
AATCTAAACATTTTACTGGATACTTTTTGATACTCGAAGGAACAAAAACTGAAGAATCAT
TATAAAAGGCGAAAAAATCCTAAATTTTACACATGCTTAAAAAATACACTTCAGAACGTG
TGAATAATTAACACTGAAGGAGACATTAACCAAGGAACAGACATGGAAATTATCAATATT
CGATCTTTAACTCTTCATCAAATATAGATGTAGTAATTTGGAATATAGTCAGGTCCATAG
TGTTGTATGTTTCAGTATGTATCCATTTGACTAATTTGATGTTTATATATATAATAAATA
ATTTTCTCTCGGAAAAAAA
(3019 bp)

- SilkBase 1999-2023 -