SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_SariMG_comp30361_c1_seq1
Scaffold_id
NCBI non-redundant
(nr)		hypothetical_protein_KGM_17243_[Danaus_plexippus]
Ontology
GO:0000166 F nucleotide binding
GO:0000178 C exosome (RNase complex)
GO:0000398 P mRNA splicing, via spliceosome
GO:0000460 P maturation of 5.8S rRNA
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003724 F RNA helicase activity
GO:0004386 F helicase activity
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005681 C spliceosomal complex
GO:0005730 C nucleolus
GO:0006364 P rRNA processing
GO:0006397 P mRNA processing
GO:0006401 P RNA catabolic process
GO:0008380 P RNA splicing
GO:0016787 F hydrolase activity
GO:0044822 F RNA binding
GO:0071013 C catalytic step 2 spliceosome
Transcript
Level		FPKM:8.58 TPM:8.60
ORF EntryO_SariMG15745_complete:A_SariMG_comp30361_c1_seq1
Sequence
(Nucleotide)
ATAGACTGCACATACTTTTTAAATGTTTATTAAACTTATGTTGTAAAACATATCATGTCA
ATTAAAATACCGTCAATTAGGTATGTTTTTTTCTAAAATATTTTCTTAAATTTTACATAT
ACAAGCTAGCCGCGAACACAATGTCTCTCTTCAATAATTTGATAGCGTCACTAAATTTGT
TTTCAAGATCTGTATTGCCAATGTTCTTTGCCGCTTGACACAGTTGTCTTAACACTTCTT
CGAGACGTCGCATACATCTTATAATGGAACCTTCAAAGACATCAGTCATTTTGCAAATCT
GTAGAAAGTTGGCGCCCTTTGCCCACGCGAGGACGACGTCCATAAGGGTGCATTTGAATT
TCCCGACGTACTCGTCTTCGTCCAAATCCATTTTAGCGTCAATAGACACTTTAGCTATCC
TCCGGGCATATTCCTGCAATTGTCTGAGCACACCCCTGAGTTCCTCCCCGGTGGCGCTCG
CCTGCGTCGAGTTCTCATCACACACGAAACAGCTGACTAGAGCTGCGCTTTGTTCAGAAC
TCAACGAGTTAAACACACCGTTGAATATCAACTCCGTTAGTAACAACTCATCAGCACTAC
TCAATTCACAGGCTATTCTTCCCTTCATCTCTATGACGTCGGCCGCGGTGCAGTACCCGA
GCCGGCGCAGCACCCGCTTCCGCTTCCTCAGCTCGTCCATCTGGAGCACACTCTTCGCAA
ACTTCAGTTCCCCCTTCACGCTCACCAGCTCTTCGTACAGTTCCTGTTTCTTCTCGTACG
ATGTGGTGAGAGCGCCGCGGTTCTTGTCGTTATGCAATTGATGTGCGTAGAGTCTCTCTT
CAAGTATTTTAATTTTATCCACGCATTCCTTAAAGACGGGGTCGTTGATTTTCATGTCCT
TTATCGGGTTCAGTAATGGCGGTCCTTCGGGGAACCGTTTTTTCACCTCACCAATAGTCT
TAAGTACGGATTTCCGATTATCCGCCGGTCGCAAGTCTTTCGGGTAATAGACACGGAGAG
AACTGATCTGGTAAATGATTGTATGGAGGACGGGTACTACTTCCACGTCACCAACCTCTC
CAGGGGGGCACGGAACATTTGCTTCGCCATCGTACTCCGACCCTTTTTTAACGTGCAACA
ATATATCTACAAGGAGCACTGTTTCAGCAGTCAGTGGGTTCTCTTCCTGCTGCTTCTTAC
CCTTATTGGTTTTCTGCCTGAAGTTCACTATGATTCCCCAATCGTATTCGTGTTTTTCTG
TTTTTAACTTAACAAGTCTTCCCGGCTGAAGGAACGGCTTCAGATATTCCGGTTTAGTGA
TGAACGAACGGAACTGATTACCGAGTAACTCTAATTGCGATCTGATGCTGCAGTACGCCG
CTATCGAATGTTCCTTCTCGATAGTTAACGCGTTGTACTCCTTCTGTTTACCTTTTACTT
TTTCTATAAGGTCCGGAATAGCAGCTTGATTTTGAAACTGGAAGAAACTTCTTTCTATCA
TGTATTCTGGATTGATTTCTTCGACTCGTAACAAATTAAGCACCATATTATAAGTGAGAT
GGAAAGCCGAGTTAATGGGATCAGCTTTCCCCTGCACCATGCCTTTCACGACCGCCGGGG
ACACCTTCGAATCGATCATGAGTATCACGACTCCCTTATCATCAAGACCTCGTCTTCCTG
CTCTACCTGACATCTGGATATACTCGCCTGATGTTATAAATCTGAAATCCTTTCCGTCGA
ATTTTTGGCAGTTAGTAAAAACAACAGTCCTCGCAGGCATGTTCAAACCCATAGCAAATG
TCTCAGTCGCAAAGAGCGCCTTAATTAGACCTAGGCCGAACAAAATTTCAATGGTCTCTT
TCAATATAGGTAGAAGACCGCCATGATGTATGCCGATGCCTCTCCTCAGCAAAGGTATTA
CATTCTCAACTTGTGGTAGTTTACGGTCTTCTTCGGAAAGAACGTCCATCGCATTGTTGA
ACACCTCGTCTACTAGTTTTTTCTCCTCGATGGTGTTAAAGTCCAATCTCGCCATCTGCA
TAGCATACAGCTCGCAATCTTTCTTACTAAAACTGAATATGATAACGGGTGCGAAATTTC
TTTCCATAATCATTTTCACAATGTTGAATATATTAGTTTGGTTTTTATCGCGAAGTCCCC
CGCGCCGGCCGCGCTTGTCTCCTGCAGCTAATTCACCAGCGTTACTGAGCACTGCCATCG
CCGTATTGAAGTTCTCTTCTTTAAAATTACCCGATTCATCAACAACTAAGTGTATGCCAT
CTCCACCAGCTGGGAAAATGTAATGTTGAAGTGGTGTGGGCCTGTACTCAGTGTAAACAA
CATGGCATGGTTGAGAATGAAGGCGACACACCCATTCGGCAAACTGTCTTGCATTTGGTA
TTGTTGCAGACAAGAACACATAGTAAACATTATCCGGCAGTAAAATTAATGTTTCTTCCC
ACACAACACCTCTTTCTTTATCTCTCATGTAATGAATCTCATCGAATACAACCCATCCAA
CTTCACGCATAATTTCTGAACCTCTATATAACATGTTTCTTAAAATTTCAGTGGTCATGA
TCAAGCATGACGCTGATGGGTTTATAGTCACATCACCAGTGATAAGACCAACATCATGAA
ACTCTTCTGAAAACTCCCTGTACTTCTGGTTCGACAAGGCTTTTATAGGTGTTGTATATA
TTACCCTTTGCTTTTTTTTAAGAGACAATGCTATAGCATACTCAGCGACAACAGTTTTTC
CTGCTGAAGTGTGAGCCGAAACTAAAACAGATTGAAGATTGTCAATACACATAATGGCTT
CTTTCTGAAACGGATCCAGTATGAAACTATACTGTTTAGCTGGTTCAGTTGTGTTGGAAA
CAAGTGGCTTATACTCATGATTTGGTGGTACTGCAACTTCATGTGTACAACCTTCATGGG
TTTCTAAAGTGTGTATGACAATACGGGACTGTAACAACTCCAAATTTAAATCACCAATTA
AATCAGTCACATCATCATCATCTTCCTTAATTTTCTTAGATACTGAAGTATCTGCGTACT
CGACTTCTTCATAGAACCTTTTGTTATTTTTACTTACGATTTGCTCACTTGAGTCAGCTT
TATCCGAGTTAGTCAAAATAGAAGGAAGAGAAATAGAGGCATCATTTTGAATCGGATCAT
CGAAGCAATCGAATAAATTATTGACATTAGCCATTTTTTTAAATTATTTACATGTACACA
AGAACCAACTCGAACACACTAGACTGCAGAGC
(3272 bp)

- SilkBase 1999-2023 -