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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_SariMG_comp30258_c0_seq2
Scaffold_id
NCBI non-redundant
(nr)		PREDICTED:_pre-mRNA-splicing_factor_18_[Amyelois_transitella]
Ontology
GO:0000350 P generation of catalytic spliceosome for second transesterification step
GO:0000386 F second spliceosomal transesterification activity
GO:0005634 C nucleus
GO:0005681 C spliceosomal complex
GO:0005682 C U5 snRNP
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0016607 C nuclear speck
GO:0046540 C U4/U6 x U5 tri-snRNP complex
GO:0071021 C U2-type post-spliceosomal complex
GO:0071048 P nuclear mRNA surveillance
Transcript
Level		FPKM:10.43 TPM:10.46
ORF EntryO_SariMG15183_5prime_partial:A_SariMG_comp30258_c0_seq2
Sequence
(Nucleotide)
TTTTGATTATTCACATTTTTATTCTTTAGTAGTACTATACTCTACACATCTTGATGGATC
TGTGGGAAAATATTCCTGACATTTAGTCATCAATCTTTTCAGAGCTTGAATGTATTTCCT
TTGAGTTTCGTCATTCATTACATGAGCTACATTTTTGGAGAAAATCTTTTCTCTTCCTGT
TCGAGCGTGGATACCGACCATAGTGACACCAATAGGCCACGGAGCATTACCTATCGCCAT
CTGAAGATATGAATCACTAGCCATTATATAGTTTCTGTCCAACAAGTGTTTTGTTATTTC
CATTAGACTATCACAGATATCTTCAGGTAAGTTTTTCTTCTTCAACTTCCTCATCAAAGG
CTTGAGATAAACTTGAGTTTGTGTGTACGTCGCTCGTGTCATTTTGTGTTTGATTGATGT
TTTTTCAGCAGCAGTCGCTGAATTCAATTGTTGACCCCAGAGTTTTAATAAAAATTGCAA
CAGTGTCATTATGACATTCATGTCATGATTTCTGTCACCTTGACCCATAGTTTTTGCCAT
TTCTTGTATAAAGTCATAGGTTACGGAATCATCAAATGCGTCTTCATGTAATGTGTGTTC
ATTTTCATTCTGTGTACCGAGCGCTAATATTTCATTCAAATAAGCTTCATCAACTTTTTC
CATAGCCTCCTGGAAGTCATTTCGGAAACCCCTGTTGGCCTCAGGTTCCTGTATTTCTAT
TCTTCTTAATCTTCTAAATGCTTGCAACTCATTTTCACCATACAGCAGAATTGGGTGACC
TCTCTCACGCAACCTTTTTATAACCTCTGCTCTTGGTAAAGCTACAGCTTCAGAGTGCTC
ATTATCATTCTTTTCTTTTTTCAGGGCTATTTCAGCTTTTTTTTCTTCAATATTGTCTTC
CTGGTCGTTGTTGTGAACTCCATATTTTTGTAAATATTCTTCTCTTTCTTTCGCCAAAAG
GTCACCTCGTTTAAAATACTTCTTGTTTTTGTCAGGAACTAATATATTTTTTTCTTCTAA
TAACTTTCGCTTTCGAGCAATTTCTGCTTTTA
(1052 bp)

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