SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_SariMG_comp30142_c0_seq3
Scaffold_id
NCBI non-redundant
(nr)		PREDICTED:_extensin_isoform_X3_[Amyelois_transitella]
Ontology
GO:0001725 C stress fiber
GO:0001952 P regulation of cell-matrix adhesion
GO:0003779 F actin binding
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005856 C cytoskeleton
GO:0005915 C zonula adherens
GO:0005925 C focal adhesion
GO:0005927 C muscle tendon junction
GO:0008270 F zinc ion binding
GO:0015629 C actin cytoskeleton
GO:0016323 C basolateral plasma membrane
GO:0030018 C Z disc
GO:0030239 P myofibril assembly
GO:0031252 C cell leading edge
GO:0045177 C apical part of cell
GO:0045178 C basal part of cell
GO:0046872 F metal ion binding
GO:0051371 F muscle alpha-actinin binding
GO:0061061 P muscle structure development
Transcript
Level		FPKM:1.80 TPM:1.80
ORF EntryO_SariMG14518_complete:A_SariMG_comp30142_c0_seq3
Sequence
(Nucleotide)
CGAAATTGAAAGTTTAATTTCCACATTTTATATACATAATAATCGCATAATCTCTTCATG
ACTAGGTAAATTAAGCTTAACCAATCACATTGTTACAAATAGTTTATTTTAAATTTGGCA
AAAGCGAAATAGCCAATTGGTAATATATTTTACAAATACATATTTGGTTATGTACCTACT
ATATCTGCAAATTGCAGGCGATGGTTTATTGCTCATTAAAAAAATTAAATGTAACGTTAA
ATATGGATTATTGAGCTTAAGCACAATTTGTAATTAAAAAACGCTATATCGCAAAACGTT
CGCAATTTATAAAGCCGCACTACTTTTTTTTAAATCGTGAATGAAAACATAATCGGAGAA
CTAAAATATTTTAAAGTAAGAGTAGAGTGATAAATTATGTTATTTAATGTTTAGATGCAC
TTAGAGACTAATTTATGGTTAAAAATAAATTAATTAAATCTACACATTAAGCACTGAAGT
GAACCGATTCCGTACATGCTCCAAGACTTTAAGATTTAAAGCCTATACAAGTACAAGCTT
TGCCAGGTTCTATTCACAGACTACGTTATTTCTAGACCAATTATTAATATATTATTATAG
ACATATGTATTGTTATGATGTACTTATTATTATCAACATAGTTATTATATGTTTATCCCC
CTTTCGTAGATCCACTATAACGCTAGCGATGGCAAAAATAAATATTTATTTTTTATCAAA
ATTGCTAAAAAATTTCTGTTATATACCTAATCATTACAAAATGGAGCATTTCTAACGTGA
CGTCATGATCATTTGTATGTGAGTATATCGTATTAGTAGTCCTAATGGATAGTAAATTTA
GTATGAAGTTCGGCCTGAGAAATCTTCGTAGTGCTGTGTACCGGGAGGAACGCGGTAGCC
TGGGTAGTTGTGATTCAAGGCATGCTTCGCGAAGAAGCCCGAGTAATCCTTCCTAACAAC
TCCCGTATTAATGGTCGGCCATGTACTGACCGAGTGACGCCTACGCCTCGCTCATGGATA
TTAATTCGGCAAGCGTATATTGGCGAGGCTTGCGTGGTCTGCACGCAGGTCCTTTAGCCA
GTAGAAGTCTAGCTTCATTTTCAGCAGCCACCGCTTCCTTTACTGACTGAGGAGGCCATT
TCTGATCACCACGCATGTTGACGCCTCCCTTGAACGTAGCAGCAGCTGGTTGACTGGCGA
ATACAGGCGGTGGTCTCTGGTGGATAGGCGGTTGCTGACGGAGTGTGATGGTCGTCGGCG
GCGGTTCGTAAAGCTTCTGCGGGGGCTGGTATGCAGGCTCCGAGTACTGAGGCGAATACT
GAGACTGAGGAGAGAGAGGGGCCGGTACTGGGGCCCAACGATTCGGCTGCTGCCGGTAGG
GTTGCGGCACGATGCCCGGGGACGGCGGACCCTGACGGTACGGCGCTTGGGCGACCGAGG
ACACTGAGGCGCCCGGTCCGATAGGTATCAGCTTACTTAGCCCAGTAGGCTCCTGTCGTT
TCCCTTCACTGAACGCCGGTTGCGATCGAGGTTGCTGGTATTGAGGTGAATGTTGCTGGG
GTTGGTATTGGGGCGCTTGGTACTGGGATTGGGGCTGAGGTTGGTATTGGGGTTGTGCGG
ACGGGGAGTGCTGCGCGTTGTTGTGGTACGCGGGACTCTGCTGTGGTGTTTGATGATATC
CGTTTGTTTCGGGCACTGGCGGCCACACTACTTTCTTCTGACTCGGGTATCCTTTACGGT
TGCGTTCTTCCTCTTCAAGCATACGCAACACTGCAGAATTGGCAAGGTTTGCTGGCTTGT
CTGTTGTAGGGTTGTTGAAATCAATTCCAACTGAGCCATTGTCGAGATGATGCAGATGTT
TGTTAAGAGTTTCCTTTATATTCTGTTGTGAATAAAGGCCGATGGGCGAGTTGAACTGCT
TGTGTACTATCTTCGGGCCGGTGGCCATCTTGAGGTCGTTCGTTCAACGCTTGTGCGGCG
GTCAGATTCGTGCGAGCGGCGTCGGCGCCTATCTCTAACTGAAGCAATCGTACCGTCCGC
CCGCCCACCAGCGGCGCGCGCGTCTTTGTATTAATGTAACAAACGTCCTCACCTGAGATA
AACAAACGTTTCTGATGTCCTTGAACTCAAATGACTAAAGTTGTCAAATTATAATTAGAC
AAGAATGATCACTGATACCGTCG
(2183 bp)

- SilkBase 1999-2023 -