SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_SariMG_comp30087_c0_seq4
Scaffold_id
NCBI non-redundant
(nr)		PREDICTED:_squid_protein_homologue_isoform_X2_[Bombyx_mori]
Ontology
GO:0000166 F nucleotide binding
GO:0000184 P nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0000381 P regulation of alternative mRNA splicing, via spliceosome
GO:0000398 P mRNA splicing, via spliceosome
GO:0000785 C chromatin
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003729 F mRNA binding
GO:0003730 F mRNA 3'-UTR binding
GO:0005634 C nucleus
GO:0005703 C polytene chromosome puff
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0006405 P RNA export from nucleus
GO:0006406 P mRNA export from nucleus
GO:0007293 P germarium-derived egg chamber formation
GO:0007297 P ovarian follicle cell migration
GO:0007314 P oocyte anterior/posterior axis specification
GO:0008069 P dorsal/ventral axis specification, ovarian follicular epithelium
GO:0008298 P intracellular mRNA localization
GO:0009953 P dorsal/ventral pattern formation
GO:0016325 P oocyte microtubule cytoskeleton organization
GO:0017148 P negative regulation of translation
GO:0019094 P pole plasm mRNA localization
GO:0030529 C ribonucleoprotein complex
GO:0030720 P oocyte localization involved in germarium-derived egg chamber formation
GO:0033119 P negative regulation of RNA splicing
GO:0035062 C omega speckle
GO:0045451 P pole plasm oskar mRNA localization
GO:0048477 P oogenesis
GO:0071011 C precatalytic spliceosome
GO:0071013 C catalytic step 2 spliceosome
Transcript
Level		FPKM:31.60 TPM:31.69
ORF EntryO_SariMG14188_complete:A_SariMG_comp30087_c0_seq4
Sequence
(Nucleotide)
TTTTTTTTTTTTTTTTTTTTATGACAAACACGAGACAAAGTCAATATATTTATTTACAAG
GTTTAATTACGACATACAACTTTTTGTATCGTTAAAAGTTTTGTTCATGTCTGGATTACT
TACAATCTAAAAAAAAATTTCAACTCTATTCAATGGAAGAAACATCTATTTATTTTATTT
TGTTGTATAAAATAACATGATTCCGAAATCTCTTTACCGAGTAATATAAAAGTACACAAT
ATTTTTGATATGAGATCCAGTTGAATAGACTGACAGAACGGGCGAGGAAGGACTTTTAGA
AAGAGCAGGGGGGGAGGTAGGGGAGACTATTTCATTCACGCACACAAACTCGTAAACACA
TACGCAGAACATAAATCATCAGTAACTGGCTCTCCGGTACACACAAATGACTGCTAATTT
ATAAGCTCTATTTCAATAATTATTATTAATTACTTCTACAAAAGAATTCATCACGAAAGT
AAGATTTCGAGACGGTGTATGTCAAAATCTAATTCAGCAATAATACTCAAGGAGAAACTA
TTATCCACATACTATATTATTATAATTAATAAGCGACAACGGGCAAACCGGGGTCGAATC
GCTTGCGACACTATTTTTTTATACTTAAAACTCTTATAAAGAATTACTCTCTTAAATTAA
TAATGTGGAATGGAATGAGGCGCCCCCTGCGCGGCGAGAGGAGACTTGCGCGAGGGACGC
TCGTGCCCGGTGACTTAACCTCACTATTTCCTATGAACTATTGGACTGAGATGAGGAGCA
GGTACGGCAGATTCTAGTAGGGCTGGTGCCTCTGGTTGGCTCGCCCGCTGCCTCCGCCTC
CGCCCCGCTGCTTGCCGCCCTGGTACCCTGCTGCCATCAGTACACACCTCTGTTACCACT
TTCCGTCTCCTCCACCGAACCTTTATTTCGACACGCACACAAAACATAACTTTTTGTGCA
CAATTCCCAAGATAAACACTCGTTATCTTTACACCTCTTTACATGTGTGTGAGTAGCGTT
TGTTTGTTATCTTATATGGAAACGATATACTCGCAATATTTCAAACTCATCGTATGATCA
GGTGTTGTTTCTAACGCAAAATCATTTTTGTCCTTTATTATTTATTTTTAAATGGTACAA
CTATATTTACCTAATGGAACAATTACACTGGCATATTCAAACCCGTATCATAATATGAGA
GTGCAAAGAGTTGACTATGTCCTCAAGAAATTAACACATTCGAAAACGGACCGACCACGT
ATTTTAATTCTAATTTGGTTCTCTAATAAGAAATACTTAAAAATAAATTAACGTATGAGC
ATGAGTGGTGTTAAAGATATAATATGCCACGGGACCACATTCGTGCGGTTTCTGGTGTCA
ATTGACACACGCATACACTACTAATATTTACCTACATTTTAAATCCTACCAAGCCAGATT
TACATTTTATGTAAATGCTTCTAAAACTAATCTGAAGTAAAATGCCTTTTAGCTGTATTG
TTTTACAGAATAATTTTATTTCAAACACAAATAACCCACATGAACATGTCAAAAGAACAC
GAAGATGCCAACGAATGAATTCCTTTCACGATCTTTTGATATTGCCATATTTAGTAAGTC
TCGTGAAATTAATGAAAGCCCATCAAAAAATGTGATTTATCATGAATCGTAACGTAATCG
CAAGATTTTACAATTTCTGTAAATAAATGCTACCACCAATGCTCCTCAAACATAAAATGG
GAAATTGACAGTTCAAATTGATCATCCTAGAGATCCATAAAAGTGTATAAGTCTCGAAAA
ATATGAGTTTGCAGCATAAACCATAAGATGTGTTAGTATATCAAGTACTAATTAATGAAG
CCACCACTTTACTTTATACATACATACACACAATCTAATAACTATCTAACTTTTACAGTT
TATTTTTTCAGTTATCGAGCCAATAAAAAGAATGTCACTTTTCTAGATGCATTCACAAGT
CAATCAAGATTACCTTAATCAATTTAACCTATTTATCTGAACCATGCACGATTTTATTTC
CATCTATAAATCGTAATTTTTAAAATATAATATAAAAATAGATTCCTTTTATGATTGCAC
CTTGAAATAAGGCTAAGGACTATGTCTAATTTAACAAGAGTCAGTAAAATTAATTCAAAG
TTATTAATGTAAATGGCAAATAATCGATTATATGCGTGAGAGGTAAGCAGAACAAACATA
ATATAATGAGTACTACACGATCGAACCTTCCACACGTTCACAAATTCCTTCAAGTTCCTC
GTTGCCTAGCTTACCGAGGAAATAGAAACAGTAATATATGTAAGTATGGTAATTATATGT
TATTTTATATGTTAAGAAACGTGTGTTAAGGCCCAACGGTGGTTATTAGTGGTCGTGCGC
GAGTGTGCGGGGGCTGTACCTTTCCCGCGTGGAGTGGGCCGCGCGCCGTACCCGCCCTCG
TACCCTCCGTAACCGCCGTAGTCTGTCGCCAACACACAACTCGTTAGACACCCGAGACCG
CGCCCCACGTCACACACCACACGCCTCACGCCTGCCCTCGCACGTCTTTCCCCATTTAAC
GATAATCCCTTTAAGATATCCCCTACACCAAACGCCGACAATACTATTCTAATATTTCCC
ACGAAAAGCAAAGTATAAAAAAGTATCATTTGAATCATTGAAATACTCAGCACAACAAAG
TAATAATTTTTCTCTGTATTAAATATTTTTTCTGTAATATTAGAGACGTGTCGACTACTC
CAAACAGTAACCACCCCACACTCCTATTCAAGTTTAAGTAGATATACTATCGACGCTAAC
TTCAAAAAACACTAGTTAGATGGAAAACACGAATGTCTGAAGTTTAATCCATACTAATTT
ACCATGTGAAGGAGTTGAGTTATTTCAGAGAAACTATTTTTCGTAGACTGAGAAAAATAT
TAGAATCTAGTAGGTTCAATTTTATAATACCATACTTACGGACTTGTGGCTATTTTGGTG
ATGCCACACGTCAGGTAATTATTGTAGAGAACAAAATGTGTGAAATAATCTCATCGACAA
ATATCTCATCTTTGTCAAAATTAGTTATATTTAAAATCTTATCATTCTCAAATTATTTAA
GTATTATAGTATTCCTTCAAGTATAAAAAAAATTGAAAACATGCAACAAATTATTTTTTA
AAACTAGTACACTAATTATTACTTCGACTGATTGTTGTGCAAAAACTTGATTATTTTCTC
ATATTAATAGTTTACAGAAGATTCTCAAATAATTATGTAATAAGCACAGAGCGAGGCAAG
CCCGTCCATCCAAACTCTACACTAATAAAGTAAATAATAAATGTGTAAGGTAAAATGTTG
CAGTTGTTAATTGATATGAATGAGAGAACTAAATGACATACCTCAGACAAAACACAGACA
TGTAAAGTTGAACTATATATGTAGAGTACCAGATGAATATCTCCACATTCAATTGTGTGC
GTGCATGCAGGGTTAGTACAGGAGAGGAGAGGTGAGTGAAGCGCGTGTCGTCAGGCTGGA
GGGAACTGGGCGGAACAGGGTCAGATATGGAAACACATTGAGAATTTTTATAACAGTGCT
TTATTCAAAAGCTTTCATCATATCTTTATCACTTTCACAATGTCTCTCCATATTTACCCC
ATTTCCCAAATGTAGCATGTGGCGTGAGTGTTAAAGTAAAAATAAATGTTACAAAAACAA
TATAAACTCGGGCGACATTGCTACATATGTCAAAGGTGGTATTACAAATAAACACTTATA
AATAGAGTGCAGGTAACATAATATTATGTACAGAATATATATGTAGTACCCGTCGAGACA
ATGACAAAGAGCGATAGGCGAATGGGCGATCGCGACTAAACCCTAAGTGGCATCGTGGTA
TGCCGCAACGGCGCGCGCGCGCGTGGACGCTTTATATAAACAAACCAAATATATAGCAAG
TTAAATGATACCTTTGCAAATAATTATACCAAATGATTAATCCTAATTAACTGGAAAACG
ATCAGGCCGACCCCGTCGTCACTTCGATTACACACACTGTCGCCTCGACAACATTCACTA
TGCATCATCTCGATAAAATATAAACTATTTATATGATATCGATACAAAAATAAATATTCT
CTACAGACTAAGTTAATACCTAAGGTTCGCGTGATGTCCGTCGAACTAGTGAGAGCTGGC
GCGAGCACGTGCCGTGCTGTGCTGTGCTCGGGGACGGAGCGCGCCTCGCTCGCAACGCTA
ACCTAGCAGCTTAACACTACGCGTACATTACGTGCCTACACTATACAGTATACACTAGGG
ATCAGGTAACATCAGTCGAGGTAACGTGTCGGGGAGCGGGCCGGCGGCGCTCGGCCCACG
CTAGTACTGCTTGCCGCGTTTACCGTAATTCGGGTATCCGGAGTAATCGTATCCGCCGTA
GCCCCCGTAGCCGTCGTATCCGTAGCCGCCGTACCCGTAGCCGTCGTATCCGCCGCCATA
GCCTCCCTGCCCGTACCCGTAACCGCCGTAGCCCTGGTTGCCCCACGGCTGACCCCCGTA
GCCGCCGCGGCCTCCGCGCCCGCCCCGAGCCCCCCTGCCGCCGCGGGCCCCGCGCCCGCT
CATACCCCCGGGCCCATCAGGCTTGGGCGTGGCTCGCTTCACGTCCACCTCCTTGCCACC
GATCGTCTGTTTAGGTGTCTTCAGTAGTTCATTCACCACTTGTTCGGATTCAAACGTGAT
GAAGCAGAATCCTTTCCTCTGGTTCTTTGTCTTATCGAAAGGCATTTCTACCTCTATTAT
ATTTCCAAAATTACTGAAGAAATTTTTTATTTCATCATCTGAGATTTCACTACTGAGACC
ACCGACGAAGATCTTGCCATGCCTCGCCTTCGCCTTCTTAGGGTCAACTTTCTTACTGTT
GATAGTGTGCTCACCAGCTGCCATAACCTTATCAATAGAATCTGGCGCTTTGAAAACTAT
GAATGCAAACCCTCGTGACCTCCCCGTGTTTGGATCTGTCTTTACATTAATGCTCTCAAT
CTCACCGTAAGCACTGAAGTGATCACGTAATTCCTTGTCTGATGTTTCCCAGCTTAACCC
GCCAACAAAAAGTTTTCTGTCATCATCGCGTCCGGGGGCTTCGGCACTGTTATCCTGTCC
ATCTCCTCCACCGTGCTCCGAATTTCCATTTAACTGATTATCGGTGGTAATATCTTGTGC
AAAATTGTCGTTATTAGCCATGACTTATATTATCTTAACACTTAATAATAACTAAACCTA
CGGGTCTAGAAATAGATGCGACCTTCAACACCGAATGCCAAATGCAGAAGAAAGAAAGGA
AGTGCGTGATGAGTCGGCG
(5359 bp)

- SilkBase 1999-2023 -