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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_SariMG_comp30045_c0_seq3
Scaffold_id
NCBI non-redundant
(nr)		PREDICTED:_DNA_repair_endonuclease_XPF_[Amyelois_transitella]
Ontology
GO:0000014 F single-stranded DNA endodeoxyribonuclease activity
GO:0000110 C nucleotide-excision repair factor 1 complex
GO:0000712 P resolution of meiotic recombination intermediates
GO:0000724 P double-strand break repair via homologous recombination
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003684 F damaged DNA binding
GO:0003697 F single-stranded DNA binding
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0006259 P DNA metabolic process
GO:0006281 P DNA repair
GO:0006289 P nucleotide-excision repair
GO:0006296 P nucleotide-excision repair, DNA incision, 5'-to lesion
GO:0006298 P mismatch repair
GO:0006302 P double-strand break repair
GO:0006310 P DNA recombination
GO:0006974 P cellular response to DNA damage stimulus
GO:0007095 P mitotic G2 DNA damage checkpoint signaling
GO:0007131 P reciprocal meiotic recombination
GO:0007143 P female meiotic nuclear division
GO:0016321 P female meiosis chromosome segregation
GO:0016787 F hydrolase activity
GO:0043234 C protein-containing complex
GO:0045132 P meiotic chromosome segregation
GO:0046982 F protein heterodimerization activity
GO:0051321 P meiotic cell cycle
GO:1901255 P nucleotide-excision repair involved in interstrand cross-link repair
Transcript
Level		FPKM:3.82 TPM:3.83
ORF EntryO_SariMG13982_complete:A_SariMG_comp30045_c0_seq3
Sequence
(Nucleotide)
GTATTGATTTTATTGATATTTGCGTTTTATAAATATCTAACTACGTTCTCACTTATTATC
ATAAAATAAGGAGTGATTATTAGAAAGCATCAAAATTGAATATTCATGGCGTAATTTTTG
TCTTGATAATATCAATCATGGCCTGGAGGAGTCATGGAGTAACCAACTTTGATATGATCC
AAAAGTTAAAGGCTAATGGAATAGTAAAATCTGATGCCGTTGTAAATGCAATGCTAATTG
CAGACAGAAAAAATTACTGTCTACATACTCCCTATCTTGATTCACCTCAATCTATAGGAT
ATTCTGCTACAATAAGCGCACCGCATATGCATGCTCATGCTTTGGAAATATTAAAAAATC
AATTGCTCCCTGGTGAAAAAGCGTTAGATGTGGGTTCTGGTTCAGGTTACCTTACTGCAT
GCATGGCCCAGATGGTAGGAGAGACAGGAAATGTTATTGGCATTGATCATATTCCAGAAC
TTATTGAATTGGGTACAAGAAACATAAACAGTGACAACCCAACGTTACTGACTTCAGGGA
GAATTAAACTTATAGTCGGTGACGGACGTCAGGGCTACCCACCTGAAGCACCATACAGTG
CCATCCATGTAGGAGCTGCAGCCCCTACTATGCCTCAAGCTCTTATTGAGCAGTTAAAAC
CAGGAGGCAGATTAATTGTGCCTGTTGGACCAGAAGGCGGGGAACAAGTTTTAACTCAGG
TTGATAAAGCAGCTGATGGCACTACTACAGTGAAGAAGCTTATGAGTGTGGTTTATGTTC
CCCTGACTGATAAGGATCATCAGTACCGCCCCTCGCGTTAATTTTGATCATCTTTTGGAA
TATGAAGACTTTGACCTATATATGAATTTATATCAATAACTATTTAAAAATAAAACATTG
TTATGAATAATATTAATTAATAATTTATTGTAATTCCTATAAATACATATAATTTTTATT
TTGTGTAAAACTTTCCTGTGAACTTTTTCTTTCCAAATGGTTTTTCGTTTTGATTCGTAG
CGTCTTGCGGTAGCGCCTTTACATGGAGTATAGAATGTAATGTTTCCGCTTCATTTTTAT
TTTCAATAATGTCCGTTAGTTGTTCCAGAGTTAGTGTTATCAAGTGGTCTAAAGATACAC
CTTTATTCATGAGCCGAGTTATATTTTTAGTAGTGACTCCGGGTAACTTTTGTACGAAAT
CATGTATGGACGTATTATATCTTTCATGTTGCATATCGTCTGCTGCATTTTCACTACTGT
GGGCTAAGGCTTCTTCTATATTTGGATTCTGACGGCCTTGCTTTAATTCGTAAAAAAGTT
CTGCAGTAGCGTAAGGACTCGGGGACCAGACCAATTTTAACCTTGGAAAATGTATCGTAA
GAAGCTGGAGTTTTTGTTGAATATCCGCACCCGCTGTATCCGTTGAAACAACGTAATGGC
CCTGAAGATTAAACGGTTTATTTTGATCAAATTCAATGAGCAGGATAGGTCTACTGTAAT
TCCTAGACATTTGTGTGCACTGTGTGTAGAGGCGACCAGAATTCAAAGAGCCAATTAAAT
CTGATATAGACTTTCTTTCGACGCATATATCTGGTGTTAAAATATAGTCACCAATTGCTA
TCGTGACAGGTTCAATGTTTATTCCTTTTTTATGGAGCAGAGATGGTAGGTCTGAACGAA
ATTCTCTCATATCCACTATGATCACTGGTTTCTCTTTGGGTCCCTTGCTCTGCCCGCCAG
CTTTCCTAGTATTCACTGCGTCCTCTACTTCTTCTTCTACATTTAAGTTAAAGTATTCGT
CGGTTTTTCCATCTTGATACGACGGCACCACCATTACACTTTTCGCTTGAATCAGTAGCT
CGAACGCTTGCTTTTCTCTCTTCAAAGACGTAAGGTATGCTTGTTCTTCTACTGTCTTAT
CGTGTATTAAAAAATATATTTTACACGCCTGATCCTCTTGTTTTTTCTTACTTTCGTATA
ACTCTATTTGCCTTACAGCGGACACGTCGCAATGATAGAGAATAATATACTCTGGTTTAA
GCACTTCCAACGTGTTCTCGAGTGAAAACGTATTTCCATTTTCTTTGAACGTTTGAATAA
ATATAACAGGCTTGTCGATTTCCATTTGTGTTATGTCTAAATTATCTAGCTGTGAAATGG
GTTCGAAAATACTTTCATCATGTTCTTTTTTTATATCACGCTCGACATCCGCCTGTGTTA
GAGTCAACACGTAATTTGATTTAACTGAATCCAATACAGCGCCATCTTCCACGTTATTTT
CTTCAGAATCAATTGTCGTTATTAATTTCGCCTCGGCATTTTTTTTATTTTCCTCTTGAC
TCTCTAAAGGAATTGTGTTCTTTAATTTTTTATATTTCGACGCTACAGCTGTTACGGTGA
TGTCCGTTTTAAAAGCCGTGTAAAACAGATATCTGCTCGGGCCCATCATGAGATAGTTGT
TCAGCTGATAGCACGTTCGATTATCCTGACAGAGTACTAGAATTTTCGTTTTATTCAGAT
TCCATTCTTTATCCTTCTTAACTTCCTCTGGGATCTCTTCTGTCAGCAGGCTACTCAAAC
ATTTCCATTTTGGTGAAAATTCTGGATCGAATTCGTTTTTATTATTAAATACTCTTGATC
TCGCTAGACGAAATAATTCCTCAGCTGAATCGAGTAGTATCCATCCGGAATTTATTTTGG
CATATTCAGGTGTTCTGTATTTGCTGACTAACGCATAAAATGATACAGCGTCATCATGTA
TTAAGCTTATGATCATGCTCCTAAGAACTTTGAGGTCTTGAATATACTCCTTCATTCTGG
TACTTAACTGATTCCAAACGCAATCTAACTGTGATTGTAGTATCTTGTGGAATTTTTTTG
TCAAGCAATTCTCTATTGATATTTCCTGTAAATCTATAGTCCTGTTGATACTCTTCAGCT
GTTTAACAGTATAGTTCATAATGTCAAGTAGGCAACCTTGAATGTGGGTCATGTTTGTGG
TGAGAGGTACATGAAGTTCAACCACTTGAGCTTGTCTGTATTTAAGATTCTTGATTATAG
CACCATGGAATCTTGGCCATAAGAATAATTCTGTTAAAAACAATGCTCTCATAACTTTTT
CCACTTGATGATATCCAAATGTAAATGAAATAGGTGAATTAGAAAATGCTTTAATGAATC
CTGTCTTGTTTTTTTGTCTATATAATCTCAGTGCAAATGCCTCTTGACAAGACTCTAGTA
CATTGTGAGCTCGGAGAACAATAATTCCAGAAATATGAGATATTGGCACTCTATTTTTTA
ATAAATCTACTACTAAAATACGTGTTGACACTAAATGAACACCACCTTCTAAGTATACCT
TTTTTCTTTCTGCACCAAGGTTAGGTAGTGCGGTTAACTGAAATTTTTCACTAAAGTACT
TTTCCTCATGTTCATTACTATTTATAACCAACACCAAGTTACTAGCGTCTTTATACACCC
ACATTAGGTTTGCAATTATAGTGTTGTAATTTAAGCCCTTTGCCATAATAACCAAAGCAT
CTTTTTCGAAAATATCCATGAATATCTGCTTCTGAAATTCTAACATGGGATATTTGTTTT
CAATAAAAGCTAAACTATTTTTAGACTCATCAACATCGATATCATCTGTGCAAGTTTTTC
TGTGTGTCTCCATTTCCATTGAAATAAAGAATTTTCCAATATGCAAACCATTGATCGA
(3718 bp)

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