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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_SariMG_comp30006_c0_seq2
Scaffold_id
NCBI non-redundant
(nr)		aubergine_protein_[Bombyx_mori]
Ontology
GO:0000398 P mRNA splicing, via spliceosome
GO:0001556 P oocyte maturation
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005875 C microtubule associated complex
GO:0006342 P heterochromatin assembly
GO:0006417 P regulation of translation
GO:0006446 P regulation of translational initiation
GO:0007076 P mitotic chromosome condensation
GO:0007275 P multicellular organism development
GO:0007279 P pole cell formation
GO:0007317 P regulation of pole plasm oskar mRNA localization
GO:0007318 P pole plasm protein localization
GO:0010529 P negative regulation of transposition
GO:0016246 P RNA interference
GO:0030154 P cell differentiation
GO:0030423 P targeting of mRNA for destruction involved in RNA interference
GO:0030717 P oocyte karyosome formation
GO:0031047 P gene silencing by RNA
GO:0034584 F piRNA binding
GO:0035282 P segmentation
GO:0043186 C P granule
GO:0045089 P positive regulation of innate immune response
GO:0046011 P regulation of oskar mRNA translation
GO:0046012 P positive regulation of oskar mRNA translation
GO:0046594 P maintenance of pole plasm mRNA location
GO:0046843 P dorsal appendage formation
GO:0048477 P oogenesis
GO:0050829 P defense response to Gram-negative bacterium
GO:0060213 P positive regulation of nuclear-transcribed mRNA poly(A) tail shortening
GO:0071011 C precatalytic spliceosome
GO:0071013 C catalytic step 2 spliceosome
Transcript
Level		FPKM:5.47 TPM:5.49
ORF EntryO_SariMG13801_complete:A_SariMG_comp30006_c0_seq2
Sequence
(Nucleotide)
CGCGTTTGAAAATAAATTAAAGTCAGTTATTGTTTTGAAAGTTTTTCAATTTTGAATAAA
ACATCAGTTTTTGTTAAAACATTCAGATAAAATGTCGGAACGAGGTAGAGGAAGGGCACG
TGGGCGTGCTGGCCGTGGTGGTGATGGTACGGGTCAACCACCCAGAAGGCCTGGAGAGGC
TCCACAAACATCTGGGCCTCGCCCTCAACCACCTTCAGCTTGGGGTCCACCTACAGTTGC
ACCGCCTATACGGGCTGGAGTCCCAACTCCTACTGCGCAGGCTGGTCGTGCATCTCATCG
TACAACACCCACTACTCATGATCATCCAGGAGATGTCGATATACAGCAGCGTATGCAAAA
ACTAGAAATTGCAGCTGCTGGTGGGGATGCTGGGAGTACAGTCGTTGGACGTGGTTCTCG
TCGTGGAGGAGGTCGTGTTTTACCTGAACAAATGACTATAATACGTACCCGTCCAACAGC
TCTTGATATGAAAAAAGGTACAACTGGCACTCCGATTGATTTGCTTGCCAACTATTTCCT
AGTGCAGAAAACACCCCAGTGGTGTTTGTATCAATATCATGTCGATGTGTCCCCTCAAGA
GGACAGTACGGTCGTACGAAAAGCTTTATTGCGTGTGCATGCAAAGACACTCGGAGGATA
TCTATTTGACGGTACGGTGTTGTACACACTAAAGAGATTGCACCCGGATCCCATGGAGTT
ATACTCTGATAGAAAAACTGATAATGAACGCATGAGATTGTTAATCAAGCTTACCGGTGA
CGTCAGCCCTGGAGACTACCACTACATTCAGATTTTTAACATAATTGTGAGGAAATGTTT
CATGCTCCTCAATCTTCAGCTCGTAGGAAGAGATTACTTTGATCCCTTAGCTAAGGTCGA
CATTCCTGAATTCAAACTTCAAGTGTGGCCAGGATACAAGACAACAATAAATCAGTTTGA
AGATAAGCTGCTGATGGTAACTGAAATAGCCCACAAAGTACTGAGAATGGACAACGTATT
GCAAATGATTAATGAATATGCTACCACCAAAGGGCAAAACTACAAAAAGAGCTTCACTCA
GGATATTGTAGGAAGAATCGTCATGACTGATTACAACAAACGCACATACAGAATTGACGA
CATTGCCTGGAATGTTTCTCCAAAATCTACATTCAAAATGAGAGATGATAACGTAAGCTA
CGTCGACTATTACTACAAGAAATACAATATTAGAATCCAGGATTTAAATCAACCGCTGCT
GATATCTCGCTCGAAACCCCGAGAGATTCGCGCTGGTATGCCCGAGCTGGTATATCTGAT
TCCGGAATTGTGCTTCCAAACTGGATTATCAGATGAAATGCGTGCAAACTTCAAACTAAT
GCGGTCCCTCGACATGTACACGAAACTAGGACCCGATAAACGTATCCAAAAATTACTTCA
TTTCAACAGGAGATTCACACAAACCCCTGAAGTTGTCGAGGAACTGGGTAAATGGTCACT
GAAGTTATCTAACGAATTAATTAGGATCAAAGGCCGTCAATTGCCTCCTGAAAATATAGT
GCAAGGAAATAATTTGAAATACCCAGCCGGAGACACAACAGAGGGTTGGACTAGAGATAT
GAGATCAAAACCTTTGTTGTCCCTCGCACAATTGTCGTCATGGGTCGTGATAACACCGGA
GCGCCTCCGCCGCGATACCGAGTCATTCGTTGATCTTATTATGAAGACCGGTGCAGGCTG
TGGCTTCCGGATGAGCAAACCGGAAATAGTCACTATACGTATGGATTCGGCCACCGAATA
TGGCAATATGTGTGAGGCAACTATAGCCAAGAGAAATCCCGCCATGATTTTATGTGTACT
AGCAAGAAATTCACCAGACAGGTACGAATCAATCAAAAAGAAATGTACAGTGGACCGAGC
TGTACCGACTCAAGTTGTTTGCGCTCGTAATATGACGAGCAAGTCCGCGATGTCTATTGC
AACAAAGGTGGCCATACAAATGAACTGTAAGTTGGGAGGTGCCCCGTGGACCGTTGAGAT
ACCGTTGCCTTCGCTCATCGTCATCGGATATGATGTATGCCATGACCCGCGTTTCAAAGA
GAAGAGCTACGGCGCGTTCGTCGCTACGCTAGACAAGAACCTGACACAGTACTACTCGGC
TGTCAACGCGCACACGTCCGGTGAAGAACTAAGCGGACACATGGGCTTTAACATTGTCTG
TGCCCTTAAAAAATTCCGAGAAAGGAACGGTAATCTCCCTACTAGAATCTTTATTTATCG
CGACGGTGTAGGCGATGGCCAACTCCCATATGTCTACAACCATGAGGTTGTGGAATTAAA
GAGGAAGCTGAGCGAAGTGTACGCCGGCGTTGAATACAAGATGGCGTTCATAGTCGTCTC
GAAGCGCATCAACACGCGCGTGTTCATCGATCGAGGCAGGTCCGGGGAGAACCCCCGCCC
CGGCACTATTATCGACGATGTTATTACACTGCCAGAGCGATATGATTTCTACTTGGTGTC
ACAAAACGTGCGAGAAGGCACCATTGCACCCACCTCTTACAATGTCCTTGAGGACACGAC
GGGTCTGCCTCCTGATCGTATTCAACGGCTTACATACAAGTTGACTCATTTGTATTTCAA
CTGCTCGTCGCAAGTGCGTGTCCCCGCGGTGTGCCAGTACGCGCACAAGTTGGCGTTCCT
AGCGGCCAACAGTTTGCACAACTCGCCGCATTACTCACTCAGTGACACTTTATATTTCCT
TTAAATAACTACTAGAGATAAGTTTAAAAAAAACTAGACACTGGCAAATGCGTCATTTAC
GCCTTGCCGACCTCGATAGAAAAAAAAACTTTACAGGAAGATCATTATTATTAAGATAAG
CATTATCGATGTTGAAATTTACCTAGTCGTTAAGTATTGATTCGTGTGATTTTTACCACC
TCAACTAAATATACATTACTTTAATGTTTTGTTAGGTGTTAATTATATTTTTTTTATATG
AAACGAAACTTACGTGATTTGTATTAATTATTAATCTTTA
(3040 bp)

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