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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_SariMG_comp29735_c0_seq1
Scaffold_id
NCBI non-redundant
(nr)		PREDICTED:_lysine-specific_demethylase_lid_isoform_X2_[Bombyx_mori]
Ontology
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0003677 F DNA binding
GO:0003682 F chromatin binding
GO:0003700 F DNA-binding transcription factor activity
GO:0003713 F transcription coactivator activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006366 P transcription by RNA polymerase II
GO:0007275 P multicellular organism development
GO:0007283 P spermatogenesis
GO:0008270 F zinc ion binding
GO:0008584 P male gonad development
GO:0016491 F oxidoreductase activity
GO:0016568 P chromatin organization
GO:0016706 F 2-oxoglutarate-dependent dioxygenase activity
GO:0019907 C cyclin-dependent protein kinase activating kinase holoenzyme complex
GO:0031490 F chromatin DNA binding
GO:0032452 F histone demethylase activity
GO:0032922 P circadian regulation of gene expression
GO:0032993 C protein-DNA complex
GO:0034720 P histone H3-K4 demethylation
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0046872 F metal ion binding
GO:0048511 P rhythmic process
GO:0051213 F dioxygenase activity
GO:0055114 P obsolete oxidation-reduction process
GO:1901726 P negative regulation of histone deacetylase activity
Transcript
Level		FPKM:3.92 TPM:3.93
ORF EntryO_SariMG12665_3prime_partial:A_SariMG_comp29735_c0_seq1
Sequence
(Nucleotide)
GGGCTTGGTCTGGGTGGTGGCGCCGCGGCTGCCGGCTGGCGCGCTGGCGGCGGCCCGCCT
CGAGCAGGCGGGGGCCGGGGCGCCTGCCAGGGCCGGGGCCGGGACCAGCACCGCCGCTGG
TGGGTTCCCCGGCAGCAGCTCGTGCCGCGCAGACGGCGGCCCACACCTGCGCCTGCTCCT
CTAACCTCACCTCGAGCAGGTCTCCCTCCAGCATGAGGTCTTCCAGTTTGTGCAGCAGGG
CAGGTGCTAGCCTCGCGTTAGGAGACCTGGGGCTGGCGCTGTACGCGTGCTCTACACTGG
CTGAACACCTAGGATTTTGTGAGACACTTTGGGAGTCGTGCGCCCTCCCAGTTGCTTTTT
TTAATTCAGCATTTAATTTATCGGCTTTCTCTCTGTTAACGTGGTGGGTCCGGTGATGGT
GATGGGCTGCCAGCAGCGGGTCAGAGAGTAGGGCTCGAGCGGCGTCCTGCCAGGCCATGC
CGCGCTCCGTCACGCACTGTAGTGCCTCGCCCTCCGCCAGCCGGACCGGCAGCTTCTGCA
GCCACACCAGTAGAGCCAGGATACGGTCCAGCCGGGGTCGTTTAGTGCGCATGCACTCCG
AGCACAGGAACTTGGGTTCGAGTCCCGCGTACGGCGAATCCGCCGGCTCCGGGGACTCCT
CGCGCTCCTCCTTCGATGCCGCTATACATGAGCCATGGAACCAGTCCTTGCAGAGCTCGC
ACTGCGTCATGGCCCCGTACTGGCGCTTCTGACAGACGCAGAAGGTGACGCCCGCGGTGG
GGGGCGCGCGCACTTCTTTACGCATATTCCGAACCCGGAGTTGTTTGATAGCGTTGAGCT
CGTTGCTCTCGGCCTGTTTGAACGCGGCGACTATCTCCGTCGGCGTCGAGTCCTCGCTGA
AGTTCCTGAAGAACAGCCCCGCTTCGAGCGAGGAGGGCGGGGGCTCCTCCGCGCCGGAGC
CGTCGTGCGCGCCGGGGGCGGAGGTCGGGGGCGCAGGAGCCGCGCGGGGGCGCCTCCGCC
CCGCGGGCAGCGCCTCCCCGCACTCGGTGCGCGGCGACAGCGCCTCCAGTAACGAGTACG
GCCAGTTCTTCTTGAGGAACATATCGGCGGCGCCTCTCTTCCACTCCCGGGCGGAGTGCA
GCGCGGCCGCCAGCTGGTCCTTCTCGTACAGCTGCAGCGGGATCTGCAGGCCGCGCCGCA
CCACCGCCTCGACGCTGTGCATGTACGGGTACAGGTCTTTCGACTGCATCTCCTCCACCT
TAGCGAGCCAATCTCTAGCGTGTGTGGCGGCCGTTTGTAACGTGTAATAGGAGGGCAGCG
CTGCCTCGATCTCCTCTCCCTCTGCCAGCAGAGCCTCCACCTCGGCCAGGGTCGTGTACT
GCGTCTCCTCGCTCACAGACGTAAGGCACTTGGAGGTGTCCACCAGCACGGCACGAGCCC
TCGTCTCCCACTCTTCCACTTGTACTTTAAGTTTGTAGAGGGCCGCCCTCTCAATCTCTA
CCCTGTGATGAGGCACCAGTTTGTCAGCATCCTGTAAGAGCCTCTCGATGACCTCCGGAG
TGAGGGTGGCGCACTCCTCCCTGTAGCCCTGCACCTCCTCCACGAACTTGACTTGCTGGA
GTCGCGCCTGCAGCGGACCCAGCTGCGGCAACACTATGCACAGCCGACTGCCCAGTTCCA
CCACCTCCTCTAGTTCTCTGACATAGGACGGTTCAATTTTATCCAAATCCTTGTTAAGTA
GCTCCGCTGCTTTGGTTTCGAAGTCTGCTGTTTGCCGCAACACTTCTTTAACTGCGGAAC
CTTCAGGTAAGACGCAGGCGAGCCCGTCGATCTCGGCAGCGAACAGCGTCAGCTCGTGTA
TCGTGAGCCGGTACTTGGGATCGTGGTGTCGGGTTCTCGTCCGCATCTTGTTCAAATCCA
ACTGCTGTATCACCGATGCACATTTCTCGGCATCCTCGATGGCGGTCTCCAGAGCTCTCA
CCAGTTCCGTTTTATGCATCTTCAAATCGTGTGCTTTCTTTAAATGTGCTCGTAGCCCGT
CCAGGTCACAGGTCTTCGGTGTGTCGGGATCCAGAGCGTTCTGCACAGCCTCAGCCCATT
CGCGGAACTGTTCCGATTTCTTTTTCAATTTCTCCAGCATCGCTGGTAATTCGTCCAATG
TGTACCGATACCTGAGCGTGTGCTGGGCCGGTGCGCAGGAGCAGAGGTCGGCGTGGTGGC
GCAGGCAGGCCACGTGCCTCGTGCAGGAGCAGGTCACGCAGGAGAGGAAGCAAGTGGTCT
TGCAGAGGTGGCACTGCCGTTCATCATCAGCCAACAGTTCGAACGCCTCGCGCTCGGCCT
CCGTCACTCCCCAGTCAAGTAGTCCCTTGCGTAGTTTCCTCTCGTCATGGAGCATGGTGC
GCATGTCCCTGTAGGCCGCCAGCGCCACGCTCAGGCTGAGCGAGTCCGCCTCCAGCGCCA
TCTTGCAGACCAGCTCGTCGTGCGAGAACACGCAGTAGCGCCGCAGCGTCGAGTAGTGCG
CGATGCACTCCCTGCCCGTCTTCAGCCAATCAGCAGGTGTGAAGTTAACGGCTTCAGCAA
AGTTGTATCCCTGGTTGAAACCAGCGTGATAAGCTCTCGGGAATGTTATCACAAATTCAC
CAGCGTGTTGATCCATTCTATATACAGGAACACCAGCTTTCATTAGAACATTGGGATTCA
TGATGGTGACCAGCTGATGGAGCAGGTCCGGCTGCAGCTGGAACAGCTCCGGAGCCTCTG
CCTTCATTGCAGCTTCAAACTGCTCCGCTTTGGAACTAGGCACTCCGTACCACGTTTTGG
GTTCGCCCCAATGTAAATAGTTAATCGAGTAACTCCAGTGGTCTTCATTGTGCCAACAAA
ACGTAGCGAAGCACATGCCGACGTACAGCCACGGCACCTTCATTCCAGATATATCTGCAT
TGATATGTCCCAAAACGGAGCCTTCTAGAACGGGTAAGTTGTTCAGATTCCAGCTGGAGT
CTGCGTACTGCTGTTCACCTGGGTAGAGGTGAGCACTCGACTTGGTCGGGAACCCGGACC
CGTGGTCCATCGAGTGCAGGTCTGCGCCGTACTCTACGGTCACATCCTCGTCAAGCGAAG
ATACTATACGCCAGAACTCTTTCTCCACTGTTGATGTCGGCACCATCGGCATATTGAAGT
AATCAGATTTGAATTGATCAGCCATTTCACCAAACTGCTGTAGCGTGTACTCTCGCGTAG
CTTGTTCGAAGCCGAATGCTTCCGTCGGCTTGGAAACCTCTTCGGCTAAGCAGACGGGGC
ATCGCCAGTCGCCCTTGGGCACGTCGGCGAGCGGCGGCACCAGGCAGAACGTGTGGTACG
AGTCGTCGCACCCGTCGCATAGCAGCATCTGCTCCTCGACGTCGCCGCGCCCGCACACGT
GGCACATGTACTTCGCCAACGGATCGTCGGGGCGGAGCAGCGGGGGCGGAGGCGCCGGCG
TTACCGAGACCGTCATGTTGGAGACGCGGTGCTCCCGCAGCCGCCAGGACCTGTTCACGC
GGGACCCTCGACCGCACGAGGCTCCCGCCGACATCCACTTGTTCTCACGAGGACTAGTTC
TCCTGGTCTCCAGATTTTCCTCTTTGATAGGTGTCTTCATATTGATATCTTCCGCGGAAG
GTAAAGCTCCCTCCGCATGACTCCCCTCAGTGGCGGGTTCAGGGTCCGGCTTGTACCGCC
GCGGTGGCGGCGGGGTTGCGGCGGCACCGGGCGGACATTTCGTCGCCGATCGGCTTCGAG
TGCTGGTCGCTTTCTCTGGAGTCTGTTCACCTTTCGTTTCAATCTTAGTGTCCTTACTAT
CCCCAACTGCACCATTTTTCTTGAACACGTCGTAAGGATAAAGTATCCGTTCATAGTGAT
TCTTAAGTATTGAACCGATGCCTTTACCCTGAGGATAGCCCATACGACGTGCTATTTTCG
ACCATTTGCGTTCCGATGAACAAACTTCGAAACCATCAGCCTCTCGTACTATCTTGTGCA
AAGAATACAAATCGAGCGGTTTCCGTTCAACTGTCGGTATCTTGAGCGTCGAGCCTTGCA
GCTCCCAGAATTTTATAATTTGGTCTAAGAAGTTGAGTTTTACACGTGTTATAGCCTCTA
ACTCATTTAACCGTTGTATCCTCGGAGTAAACCGTAGCCGGTCTACATCTACAGCGAAAG
GTGGTTGCCAATGCGCTGGAGGTTTTATCTTGCAGATTCCCGATTTCTCAGCGATTGGTC
GTATCTTACTAATGTAAGCCAAAGGGTCCAAGAACTCCTCTGGGGTCGGCTCGAAGACCG
GAGCCTCTGGAGGTGGAGTGAATGTAAAATTATCAGGTTTCATGGGGGACGCCGAGTCCC
CCATGCTAACTTCGACATTAGCTTCGTCACATTTTCCCATTTTCAAGACACTATGCAGTT
CCCACAAAATGCAACTATAAATAACACTTAAACATCATCCGACGTTAAGGAATGAATAAT
GCACGGCCACAGAGAAATAACAGCATTAGAAGTAGTCTTTCCATAAGGAAACTGAACGAG
ATATTAACTGAAATTATCACCAAC
(4584 bp)

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