SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_SariMG_comp29702_c0_seq5
Scaffold_id
NCBI non-redundant
(nr)		Insulin-like_growth_factor_2_mRNA-binding_protein_1_[Papilio_xuthus]
Ontology
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003729 F mRNA binding
GO:0003730 F mRNA 3'-UTR binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006417 P regulation of translation
GO:0006810 P transport
GO:0010494 C cytoplasmic stress granule
GO:0010610 P regulation of mRNA stability involved in response to stress
GO:0010976 P positive regulation of neuron projection development
GO:0017148 P negative regulation of translation
GO:0022013 P pallium cell proliferation in forebrain
GO:0030027 C lamellipodium
GO:0030175 C filopodium
GO:0030426 C growth cone
GO:0030529 C ribonucleoprotein complex
GO:0042995 C cell projection
GO:0044822 F RNA binding
GO:0045182 F translation regulator activity
GO:0048027 F mRNA 5'-UTR binding
GO:0048471 C perinuclear region of cytoplasm
GO:0051028 P mRNA transport
GO:0070934 P CRD-mediated mRNA stabilization
GO:0070937 C CRD-mediated mRNA stability complex
GO:0097150 P neuronal stem cell population maintenance
Transcript
Level		FPKM:0.32 TPM:0.33
ORF EntryO_SariMG12558_complete:A_SariMG_comp29702_c0_seq5
Sequence
(Nucleotide)
TCGCGCTACAGGTTCTGTGTGAACGTGAATTTTTTTTTTATATTACATTTTATTGGTTGT
TTCCACCCGTGCCAATATAACAACACTTTTTATAAGTGCACGAACTTGCAAAGATTCAAA
GTAATAACAATTTATTAGGGGTGGGGTGTGTTCTAACATCAGGCGTATTGTGCAGTTACA
CAACATAGTATATTATAACACAGGATGGCAAAGCATCGCAGCCGGTCATCAAGGGTACTC
ATCAGTGGGCTACCCCTGCATGTACGCTTCGAGAACATCGAGCCGCTGCTATCACAATAC
GGAAATGTGCAGCATTGCGACAAAGCCATTTCTCGTGATGTTAATACCCAAGCGGTGTAC
ATCACGTTCGAGACACCGGAGCAGGCACACCAAGCAGTAAACGGCTTGAATGGTTTCGAA
CTCGAGGGTTGTCGAATGAAGGTGGAAACTGCGGAACAAAACGTACGGAGCGGAAGGCGT
GGACGCCCCGGCGGCGGTCGCGGGGGTGGCGGTGCACCCGGCGGCGGTTCACGACCCACC
GACTTCCCATTGCGGCTGTTAGTACAAAGTGATATGGTCGGAGCTATAATTGGTCGTCAA
GGAAGTACTATTCGCTTAATAACACAACAAAGCCGTGCGAGAGTCGATGTACACCGTAAA
GATAACGTGGGGTCACTGGAGAAAGCCATTACTATTTACGGAAATCCAGAAAACTGCACG
AACGCATGCAAGAGAATACTTGAAGTCATGCAACAGGAGGCCAACAACACTAATAAAGGT
GAAATCTGCTTGAAAATTTTGGCCCACAATAATCTGATTGGCCGAATCATTGGTAAGGGT
GGAAACACTATAAAGAGAATCATGCAAGAGACAGATACCAAGATCACCGTGTCTTCTATT
AATGACATAAATAGTTTCAATTTAGAGCGCATCATTACTGTGAAGGGATCCATTGAAAAT
ATGGCCAAAGCGGAGTCACAAATCTCAGCAAAATTGCGTCAAAGCTATGAAAATGATTTG
CAGGTGTTAGCGCCGCAGAGTATAATGTTTCCCGGCTTGCACCCTATGGCGATGATGTCG
ACAGGACGCGGCTTCTGTGGCGCCCCACCACCATTCCCGCCGCCAATCTACGCTCCTTTA
GCTGGTCAGACTGCACAACAAGGCGCTGGTGATTCACAGGAGACAACATACTTGTATATT
CCAAACAACGCTGTTGGTGCTATCATTGGCACAAAAGGTTCTCATATACGGAATATAATT
AGATTCAGCAATGCCTCTGTTAAGATCGCACCATTGGAACAAGACAAGCAACCTGAGAGC
CAGAACAATGCTCAGCAAGAGCGTAAGGTCACCATCGTTGGTAGCCCAGAAGCTCAGTGG
AAGGCGCAGTATCTAATTTTTGAGAAGATGCGAGAGGAGGGTTTCATGTCCGGTTCGGAC
GACGTCCGGCTGACTGTCGAGATTGTGGTAGCTTCGTCTCAAGTCGGGCGCATTATCGGC
AAGGGTGGTCAGAACGTGAGGGAACTGCAGCGCGTCACCGGCTCGCTGATAAAGCTGCCG
GAGCAGCACCAGCAACAAGGGAACCAGCAGCAGGACCACGATACGACCGTACACATCGTG
GGACCATTTTACAGTGTCCAGCGATCATCTGAGGCTGGATGAGAGACTACACGATGACTC
GACTACGTGTGATAAAGATTCGAATGTGTCACATCATCCAGAGAAAAGGCCCAAAAACTG
CGTAACTCCAGTTGTTTTATATCTGTGGTGATAAACTGCACATTAGTCGGCACAGCGTCG
TATCCGGGCGATGGTTGCGCAGTCGAGTGCGCCCGGCCGCCGCCGCACCGGTCAGCCGGC
GCCGGTGCAACAATAGGATACGCACAATCAAACTACAAGGCAACGTCCCCGCGCGCCCTC
ACCACTGTCTCTACCACCATCCCCCACATCGCTTGTCAGCCCTCAGCCAGCCGACGTTGC
TCCGCCGGATTCAACAACAGACAGTGTTACTAGAACGACCAGGTTTATAATTATAAGAAT
AAGATTTAACCTTCAGTTTACTTCTAGTTACCGCCCGCCGTAACTCGAAAAAAACAAAAA
AAAAAAAAACCGCACCGGCACGTGTGCCAAGCTGGGCTGGCTGTAGTGTTGACACGGCGT
GTCCGTAAAAAATATGTTGTTGTTGACGTAATTTAAATAAAATATTAAAAAAAAAAAGTA
GTGAATTTGTAATTAAAATACTTATTAACGAGGAATCCATATTTTATTCCGGAAATTATC
GTTTGTTG
(2288 bp)

- SilkBase 1999-2023 -