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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_SariMG_comp29631_c0_seq4
Scaffold_id
NCBI non-redundant
(nr)		nuclear_excision_repair_protein_rad23_[Danaus_plexippus]
Ontology
GO:0000502 C proteasome complex
GO:0000715 P nucleotide-excision repair, DNA damage recognition
GO:0000717 P nucleotide-excision repair, DNA duplex unwinding
GO:0003684 F damaged DNA binding
GO:0003697 F single-stranded DNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0006281 P DNA repair
GO:0006289 P nucleotide-excision repair
GO:0006294 P nucleotide-excision repair, preincision complex assembly
GO:0006974 P cellular response to DNA damage stimulus
GO:0007283 P spermatogenesis
GO:0031593 F polyubiquitin modification-dependent protein binding
GO:0032434 P regulation of proteasomal ubiquitin-dependent protein catabolic process
GO:0043161 P proteasome-mediated ubiquitin-dependent protein catabolic process
GO:0048568 P embryonic organ development
GO:0070911 P global genome nucleotide-excision repair
GO:0071942 C XPC complex
Transcript
Level		FPKM:5.30 TPM:5.32
ORF EntryO_SariMG12226_complete:A_SariMG_comp29631_c0_seq4
Sequence
(Nucleotide)
TAAATGTTTACTGCATAATTTTGTCGAGTCAGTATACTCAGTTGATAATTTAGGATAAAT
TTAGTGATTCATCGTCAATTTAAAAAAGTTACAAGAAAATGTTGGTTACTTTAAAAACAC
TTCAACAACAAACATTTCAAATTGAAATTGACTCGGAAGAAATCGTCAAAGCCCTCAAGC
TTAAAATTGAAGTCGAAAAGGGTAAAGATTACGCCGCCGACAATCAAAGGCTTATTTATG
CAGGAAAAATTTTACTGGATGACAACAAGTTAAGTTCATATAATATCGATGAAAAGAAAT
TTATTGTTATCATGGTAACAAAACCTAAAACAGCAGAAATGCAACAAAGTTCAACCTCTG
CAGCCGAAGCTGGTGAAAGTATTTCTACTGAGAGCGGCGACGCTAAAAATGAAGTTTCAG
CTGAAGTACCTAAAACTGCACCAACTACGGAATCAGAACCTGCTGTAGAGCCACCTGTGG
CATCTGGTGACCTTGACTTTGAATCGATTGTCCAAAGCATTATGGACATGGGATACAACA
GACTGCAAGTGGAACAGGCCTTACGTGCATCCTTTAATAACAGAGAAAGAGCTGTAGAGT
ATTTAATAACTGGTATTCCTGAAGAGTTTTTACAGGAACAGGAGGCTGAAGAAGGCTCTG
AAGAAGATCCTTTAGGATTTTTACGTGACCAGCCACAATTCCAACAAATGCGTGCTGTGA
TTCAACAGAACCCAAGTATGTTAAACTCTATACTACAACAAATTGGTCAAACTAATCCAG
CCTTGTTGCGAGTAATAAGTCAACATCAACAGGCTTTTGTTAGAATGCTTAATGAACCTA
TCAACCCTTCAGCTAGTGGAGTTACTGCAGAAGAGAATGCATTGGACACTTCACAGGCTC
AGCAGCCACAAAATGTTATTCAAGTCTCACCTCAAGATAAAGAAGCTATTGAGCGATTAA
AAGCACTGGGATTCCCTGAGCATATGGTTATACAAGCATACTTTGCATGTGAAAAAAATG
AAAATCTTGCAGCTAACTTCCTTTTGGCACAAAATTACGATGACTAAAGTTTAATATCTC
AATGTATCAAATTGGATAGACAAAATTTTTAAAAGAAAAAAATATTTAACATGGTGTTTT
AAGTTTTTATTTATAAAGTTTCTGCTTTTTTCTTACTCTAAATGTTTTATGTTATCTTAA
TTTTTCATAATTCAATGTGTTAAATTTTGTTTACTTTATTTTAAAACTGTATTTTTCATT
TGCCTTCTCCTGTATTTCGCATATATCATTCAAATTCTAAATTTTTTTAGTTGAAAATTG
CAGGATAATTTGTCTTCAGAGTATGGATTTTAATAAATACATTATAAATCTAGATACTTT
TGAGTATTTATTGTAAAAACCAATTTCCAGTGCTAAAATTGAATAAAAACTTTATCACTT
GAATGTTAAGTTTATTATTGTAAGAAAACTTCAATGTGTCTTTCTTACATTCATTTATAG
GTGGCTTAAATCTTCACATATTTCTGGAACATTTTTTTAAACACCAAATTATGGCAAATT
TGTCTTTAAGTTCTTAGACCTTAACTTCACTTTATTAAATGTTATCCATTTTTTTTAAAT
AACCTAAACTATCTTACATATTTGCAATATTTCGTAAGAAAATCTGGCAAGGATACACTA
CTATTTATTGTTAAATTTAATTTCAATTTTTACTCTCTAATAAAAATCTGGTCTTACCTA
GAAAAATATGTAGTTGCAAAACATAGACAAGTGATGGGGCTTTCAGTAAATAAGAAGACT
GTACTATTACATCAAACAGTTAATATTATTTATAAATAGCACTAAGTTAACATAAAGAAC
TATGTTGGTATAAACTTTATTCTTTCTAAATTTAAAGGCACTTTCCACAATGTTTATCAA
TAAATCTATGTCACTTGCCATGATTGATAATGTGCAACATAATATATATTAATAAAATCT
GTACATAGATAGATATATACCTGCATTTGGTATAAACTATTTATAACCATATTATCTAAT
AAATACACATTACATCAATCATGGTAAGTCAAATACATAAAATCTTACATTTAAATCTGG
TAGTCAACTAAATTACCCTTTCAGAGAACAGGTATACATACAATATAAATAACAGATATT
ACAGATAACAAGGGATGGTTCTAGTAATTGTCCTGCAGAGAATCAAAATACTCTCCATAC
ACTTGCACTTTTAAAAAATTAGTCAATATGAAGGTACAGGATAAAGATAGAACAAATATA
TATATAGTATATACATATATATACTAAATAAAAAGTACATAAGGTTCATTTCAAATTAAA
GTTCTGCTTTCCCATATTTAAAACCATTATACATATATAAAGTATATACAGAATACTATT
TTATACATTCTTTACATATTTATTCTCTGTTTATTTATACACAATGTACAAAAAATTAAT
TTCATTTAATTCATCCATAACATGTACGAGATAGAGATATTTTAGAACTGTACATTGCAA
TATGGCTATTGCACAAAATAACTAAAATATTAACTTTGGCTTATCCATTACAAACACCAG
TGTGGTGTTGAATATACTAGTCAACTTATATAGGGGTACTTTTATCACTTCAGCATCGTC
CATCACAGACTTGTGTGACATATAATTAGTATAATAACAAACTATTTGCAAAGGAAAAAA
TGGATTCCGGCAAGTTTCACAAAGCAAATATAATCAAAAATAAGAAAATTAAAGGTGTAA
CTCAAAATTATAATGCCATCCAAATTTGCTTTTCCCCTGTAATTTTGGAATGGTAAACAA
AATTGTATCTAACATAAATGTAATTAGTGAATCTATAAAACAAGAATATTGATTAAAAAC
AAAAATAACTCATATGGATATTTGACGTCTACAAGCACATATATTAAGTTAAATGATATT
AAACAATAACAGAAAATACCAAAACAGATTAACAATTATACATAATTATCAAAACTAACA
ATACTTTATGCAAACCAATTATTCTCGACATTCTTTTAATAAACAATTTGAACAATTCTG
CTTAAATTTAACATAAATCAATATAAGAATCTGTTACCGCCCTTGCACATAAGTACATTA
AATAGCATGTGCCGTTTGTTTTCAGTGTCCGGGCAGCGGCGTACCCACTTACCCAGCTGG
ACCTCATTCTGTTTTTTGTTGGCAGTATAATTCTTTCAAAGATTTTAATTCTTCTATAAG
TGCTTTATTTTGATTTTCAAGGACGGCAACTCTATTCTCCAGGCATTTGATATATTCCTT
TTTCTTGCGACGGCATTCTCTTGCCGCCTCGCGGTTCTTTAATAATCGTAATTCACGTTT
CCGCGTTTGATCTTCTAACATGGGTCCAGGCACATAAAACTGAGCATCTTGGTTCGTCGC
ATATTGAACGATTGCACCACCTCCGGCACCTCCCGATACGGCTAACGTGTGAAGCCCGCT
CTCTGTCTGTAATGCTCCAGCTGGAATAACTGCAATTTCTGCTCCTCCAAGGTCATTGAG
AATTTTTCGATAAGATGGTCTTCTTGTTAGCATTTCTCTATATTTCCGTTTTGGACTTTC
ATCATCACTACAGCTATCATCACTACATGATTGTCCTTGAGTATTTAGAACAGAGTTTGG
TTCTGGTTTTATCTGTAATGTTTGAAGTGTTCCTTGAGTGGTGTGTATAACAGAACTTGG
TTTACTGACAAGTATAACATTTCCCTTTGGTATCTGCACTGATTGTATATTTGATGCCGT
TTGTATAACTGATTGTTGATTGGGTTGTATAACAGATTGCACCTGTGCAGAGGGAGCTTG
TGCTGGTAATGTGAGCTGCACAATGCTAGTGACGGCAACGACGTGAGCAGCTGCACCACT
CGCGGAGGAGCCCGCACTCGCCAGTGACTCTGCCGAACCAGCACCGCCAACGGTACCGTT
CTCTTCGACCATTCCTTCCATTCCCACTAAGGTCACCTAAAATTCAAGGTCAACTGTCTG
TGCATTCCTTGTTCTTCCGATATGCTCAATGAGGGAAATGCTTGGTTATAACATTATCTG
GCTCCCTTACGATGACACTTCACAGGAAAACCCTAAAACGGAATCATCGCGTCACACTCG
GGAGGCGGAATTTCCTATTGCGTCTCATATTTGTAACATATTATTTCTGTATTGTAATCG
TTGTAGAATATTTTCACCATCATATGGAACATACATTATTTGTGAATCCAAATATACACG
ACCGTGACAGGTCGCAAGTTTTG
(4283 bp)

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