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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_SariMG_comp29393_c0_seq1
Scaffold_id
NCBI non-redundant
(nr)		PREDICTED:_116_kDa_U5_small_nuclear_ribonucleoprotein_component_[Amyelois_transitella]
Ontology
GO:0000166 F nucleotide binding
GO:0003924 F GTPase activity
GO:0005525 F GTP binding
GO:0005622 C intracellular anatomical structure
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005681 C spliceosomal complex
GO:0005737 C cytoplasm
GO:0006397 P mRNA processing
GO:0006412 P translation
GO:0008380 P RNA splicing
GO:0015030 C Cajal body
GO:0016020 C membrane
GO:0016607 C nuclear speck
GO:0044822 F RNA binding
GO:0071013 C catalytic step 2 spliceosome
Transcript
Level		FPKM:10.39 TPM:10.42
ORF EntryO_SariMG11458_complete:A_SariMG_comp29393_c0_seq1
Sequence
(Nucleotide)
CCGGATTTGAGGTTACATGTCAAAAAGGAAATTGCGGCTTTTGTTTTGATTTCGATTTAA
CAATTTTTGAATAGATTTATCAGTAAGTTCTAAGGATGGATGGTGATTTATATGACGAGT
TTGGTAATTACATCGGACCAGATTTGGAGTCTGACTCAGATGACGAGCAAAGCGTTTATG
GACAAGATAATAGAGATGGTGATGAAGAGGCGATGGAAGAGGATGAAGATGCCGACGCAG
AACCAGAGGTAGCTCCTATGTCGGTTGTCTTACACGAAGACAAACGTTATTATCCACAAG
CCATAGAAGTTTATGGACCTGATGTTGAAACTGTAGTCCAAGAGGAAGATACACAAGCTC
TTGATAAACCTCTAGTGGAACCAATAAAACATAAGAAGTTCCAGTTACAAGAGCAGCAGC
TTCCAGAAACTATATATGATATGGAATATATGGCTGATATGCTTGATAATACTAACTTGA
TGAGGAATGTTACACTTATGGGACACTTGCACAATGGTAAAACATCATTTGTGGACTGTT
TAATGCGACAGACACACCCTGGAACCATAAACAATGAAACCACAATCCCTATGAGGTATA
CAGATACACTGTTTGTTGAGCAAGAGAGGGGAGTCTCCATCAAGTCTATGCCCGTCACAC
TCTTACTAAAGGATGTGAAAGGGAAATCTCATCTGTTAAATATAATGGACACTCCTGGAC
ACGTGAATTTCAGTGATGAAGTTACAGCTGCATTGAGAATTTCAGATGGTGCTGTGTTAT
TTGTGGATGCAGCTGAAGGAATCATGCTAAATACAGAGCGTCTCCTACGCCATGCGGTCC
AAGAACGAGTGCACCTCACATTATGCATTAATAAGATTGACAGGCTTATGTTGGAGTTGA
AATTACCCCCTGCAGATGCATATTACAAGTTGAGGCACATTGTAGACGAGCTGAATACAA
TGTTGGAGACAAATCAGCCTCAGGACAATCCTGATGAACCAGCGACAGTGTTTTCTCCTT
TACTGGGGAACGTGTGTTTCGCTTCGTCGTTGTACGACGTGTGCTTCACCCTGGAGTCGT
TCGCGGCCATGTACGCGGCGGCTCACCCGGGCTCCGGCCTGCGCGGCTCCGACATGGCCG
CCTGGCTCTGGGGCGACGTCTACTTCAACGCGAAGACTAGACGGTTCACGAGGAAACAGC
CCCACGCGTCCGCGCAGAGGAGCTTCGTCGAGTTCATACTGGAACCGTTGTACAAGATAT
TCGCTCAGGTCGTTGGTGACGTTGATGACACACTCCCGGCCGTACTATCTGAATTGGGAA
TTAAACTGACGAAACAGGAGGCCAAGTTGAACATTCGGCCTCTACTTAGGCTAGTTTGCA
GTCGATTCTTCGGGGATTTCTGCGGTTTTGTGGAGATGGTGGTGAAGCATGTACCATCAC
CACTCGATGCCGCCCCACGGAAGGTGGCCCACACGTACCGTGGTGCCTCAGGAGCCCTGC
ACGACGACATGGTGGCGTGTGACCAGTCCGGCCGCCTGGTCGCTCACACCACCAAGATGT
ACCCTACGGACGACTGCACTTTCTTTCTCGTGTTGGCGCGTATAATGAGCGGTACGCTGT
ACGCCGGGCAGACTGTACGCGTGCTCGGCGAGAACTACAGCTCCCAGGACGAAGAGGATT
CTAGAATCATGAACGTCGGCCGCCTTTGGATATACGAGGCTAGATATAAGGTCGAGTTGA
ACCGCGTCCCGGCCGGCTGCTGGGCGCTGATCGAGGGCGTCGACCAGCCGATCGTGAAGA
CCTGCACCGTGGTCTCCGCGGAGGAGGAGTGCGAGCTGCACACGTTCACGCCGCTGCGTT
TCAACACGCAGGCCGTCGTCAAGATAGCCGTCGAGCCGGTCAACCCCTCGGAGCTGCCGA
AGATGTTGGACGGACTCAGGAAGGTGAACAAGTCGTACCCGTTGCTGTCGACGCGCGTGG
AGGAGTCCGGGGAGCACGTGATACTGGGAACCGGTGAACTCTACCTCGACTGCGTTATGC
ACGACTTGAGGAACATGTACTCCGAGATCGACATTAAAGTCGCCGATCCCGTGGTGTCGT
TCTGCGAGACTGTCGTGGAGACGTCGTCGTTGAAGTGCTTCGCGGAGACGCCGAACAAGC
GGAACAAGCTGACGATGATAGCGGAGCCCCTCGAGAGAGGCCTCGCCGAGGACATCGAGG
CCGGCGCCGTCTGCGTCACGTGGGACAGGAAGAGGCTCGGGGAGTTCTTCCAGACTAAAT
ACGATTGGGATTTGCTAGCGGCGCGTTCGATATGGGCCTTCGGTCCTGACTCCACGGGGC
CCAACATCCTGGTCGATGACACATTACCCTCCGAAGTGGACAAGCACTTGCTCGCTTCAG
TCAAAGATAGTATTGTACAAGGTTTCCAATGGGGTACAAGGGAGGGCCCCCTCTGCGAGG
AACCGATCCGCAACGTGAAGTTCAAGATCCTGGACGCGGTGATAGCGCAGGAGCCCCTGC
ACAGGGGCGGAGGCCAAATCATACCTACAGCGAGAAGGGTCGCGTACTCGGCCTTCCTGA
TGGCAACTCCTCGGCTGATGGAGCCCTACCTGTTCGTGGAGGTGCAGGCGCCCGCGGACT
GCGTCTCTGCCGTCTACACGGTCCTGGCTAAGAGGAGAGGCCACGTGACCCAGGACGCTC
CGGTGCCGGGGTCGCCGCTGTACACGATCAAGGCGTTCGTCCCGGCTATAGACTCGTTCG
GGTTCGAGACGGACCTGCGCACGCACACGCAGGGCCAGGCCTTCTGCCTCCAGGTCTTCC
ACCACTGGCAGATCGTCCCGGGGGACCCCCTCGATAAGAGCATCGTTATAAGACCTTTAG
AGCCGCAGCCCGCGACGCATTTAGCGAGAGAATTCATGATAAAAACGCGCAGACGCAAAG
GACTCAGTGAAGATGTTTCGATCAACAAGTTCTTCGACGATCCTATGTTGTTAGAGTTAG
CCAGACAAGATGTTCAGTTAAATTAGTTTATTATTAATATTTGTATAATTTCCATTCCAA
CACTTGACTGGTTTATTGGAATAAAATAATGTAATATAAAAA
(3102 bp)

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