SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_SariMG_comp29220_c0_seq1
Scaffold_id
NCBI non-redundant
(nr)		PREDICTED:_DNA_ligase_3_[Plutella_xylostella]
Ontology
GO:0000166 F nucleotide binding
GO:0000724 P double-strand break repair via homologous recombination
GO:0003677 F DNA binding
GO:0003909 F DNA ligase activity
GO:0003910 F DNA ligase (ATP) activity
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005739 C mitochondrion
GO:0006260 P DNA replication
GO:0006266 P DNA ligation
GO:0006273 P lagging strand elongation
GO:0006281 P DNA repair
GO:0006283 P transcription-coupled nucleotide-excision repair
GO:0006288 P base-excision repair, DNA ligation
GO:0006297 P nucleotide-excision repair, DNA gap filling
GO:0006302 P double-strand break repair
GO:0006310 P DNA recombination
GO:0006974 P cellular response to DNA damage stimulus
GO:0007005 P mitochondrion organization
GO:0007049 P cell cycle
GO:0008270 F zinc ion binding
GO:0016874 F ligase activity
GO:0033151 P V(D)J recombination
GO:0043504 P mitochondrial DNA repair
GO:0046872 F metal ion binding
GO:0051103 P DNA ligation involved in DNA repair
GO:0051301 P cell division
GO:0070421 C DNA ligase III-XRCC1 complex
GO:0071897 P DNA biosynthetic process
GO:0090298 P negative regulation of mitochondrial DNA replication
GO:0097681 P double-strand break repair via alternative nonhomologous end joining
Transcript
Level		FPKM:5.51 TPM:5.53
ORF EntryO_SariMG10937_complete:A_SariMG_comp29220_c0_seq1
Sequence
(Nucleotide)
TAAGAATCTTCAAGGTTTGGTTAAGCCATTTAGAATAAACTGTAACAGTATACCTTACAG
TTAATAATAACCGGAGACTATTTTATATGTCACCATTTCCGATTGTAAAATTTAAATTAT
TGATCCAATAAGATCACAGATCAAGTTTCTCAATTGACTGTCTTTCAAATTTTTACAAAT
ACATAATTTTTATTATTATAATTATCATATGACACTGGCAGAATTATCGTCGAGGGACAT
AAAAATAAAACACTTTTAGCCGTATAAAAAACAAATATATCACAGATATCTTAATTAAGG
TTCAACGAAAACGTAAAATTTCACCGTATCAAATAATTTAACTTCATCAATACATTTTAT
TAACCAACTCTTCCTGACGTGTTTTACGTTTTTACACTTGAGTTTACGTTTTAACTTTTC
CAAATTTTTCAATGTTATAGAATTATTATTGTGTACAACGTAATCAACGTCCACAGAACG
CACAGATTTCACAACTACACCGCCATATGCAATCCAATGTCTTTCAAAATGTCTCCTTTC
TTTCTCAGGAAACGATATAAAGTCCGGATAAAAACCTAGTCTTTTGTCTTTAAAAGCGTC
AGGTAAAGGATTTTCAGGTAACAGCTGAATATCCTTTCCTTTCTTAGAATTAAATTCCAT
ATCCATCTCAGGTTTTATAATTGAACTGTTAATTTCGGTTTTTCTCTTTTTATTCATAAT
TTCTTTCTTAACCAAAGAGTCGGTTTCATCAAAACTCATGTTAAAACTCGAATCTGATTC
ATTTATAGAACTATTAAAACTTTCATTCTTGATGTCTTTTGATTTATTTCTTAAGAAATC
ATTGTTTTTAGAGTTATTCTTTGCTTTTTCGTCATCGTTTGGCTCTGTTTTCACTAAGAA
ACGATCTATTTTACCCTTTTTAGGACTAAGTTTAATCTTCTTTTTCACTGGACTCTCATT
ACATTCAGAGGCACTTGCTGCTAATTTATTGAGTAATGAAACGTCGGTTTTTTCTTTTGA
AGTCTTATAGAGATTTTTGAGTTCTTCTAAATTGGTTGCAGTTTGCCAATCTTTGTCAGG
TCTCATTCGAGTCACTCTAGGAAACCGTACAGATATTCCATCGGCCGTGTGTTGGTTTGC
TTTAGTTAATTCGGTACCTGTTATTTCCCAAACAGGCTGGTTATTAGGATCCAAAGCAAC
AAAATCAGGAACCATTCCTTTATTGCAATGTAACCATGATGGCACCTTATTGTAATCCTG
TGATATCTTCACCATCAGTGGGCCCAGAACTTTCTGAAGCCTCTCTAGTGTGCTATCATC
ATGTCCTGTGTGGACTTTAGTCACAGTCACCCAATGATTACGATATGTGTCCAAACAACC
CATTAGAAAAACAGACATCATACCACCTTTTTTGCCAGTACCGAACCAAGCTCCAAGAAC
AACAAGATCTGCAGTATCAGCCATTGCACCATCAAACAAGTAATCTTTCTTCACTTTTAA
CCAATGTCTCTTTCCAGGCTCGTAAGTAGACTCTAAATCCTTTAAGACTAGACCTTCTAA
ACCAAGTTCTAATACCTCAGCAATCATCTTTGCCAAGTCTGATGGCTTACTAATTAACTC
TTGTTCTGAAAACATTACATGATTTTTAACCTCCACCATATTTTCTTCCAGAATCTTTCG
CCTCTTTCTTATAGGTAAATCAATTAACACTTGGCCATTATAATAAAGGCAATCAAACAC
AAAAAGACATACTTGAGCGTCTTTAAATTCTGATTGTTTATGCACACCTAAGGTACCAAA
CGGTAAAGGTTTGCCTGTATTAACATCAACCATCAATACTTCTGCATCAAGAATCAAATC
AACTCCTTTGGGGAATGCTTGGGGCAAATAATCTTTAAAATGGCGCACTTTATGTGCCAT
AACTGGTTTGAGGGCACGAGAGAAATATTTAAATTCATTCTCTTTTTTGTGCACTTGTAC
TCTTTCCCCATCATATTTAATCTCAGAGAACATACCATTTGGGCATTTTTTCATTGCCAT
TTCTACAGACTTACAGGCTTCTGCTAACATTGGTAACACCGGAGTCATTAGAGACAATTT
AGCCTCAACACTTCTTTTCGTAACATTTTTACTATTGAAGCTAATATTATTTCCTAGAAC
TCTCTCTAAAACCATGTTAAGATCTCTTGAAGTCTGGAAAATGTTATATGCATCTGGATG
AACCCCTTCTAATATATGTTTTGGTCCTGCATTAATCCGCAAATCTCCTTTTATAAGTCT
TATAAGCATTCTCATATCTTCTATAGTACATTTAGCAACAATTTTCTTAAACTGATATAT
TTGTTCGTCTTCTCTAGTTAATTTAGAAAGTTCTTCAAGGAAATTTTCAACATCATGAAT
AGTTAATGTGCTCACATTTGATGGTCGTGCAGTCCTTGACTTTGAGAAAAAATGTTGTAT
AGTATCTGCAATATCACCTTGTTCCAAGTGTGTTAGCATGTCATCATGGTCTATGAGGAA
TATTTTTGAGAATAGTTTTGCAAGCTGTTTACTTTTTAAATTGTAAATTCTCTTTGATAC
TTGGGGAAGAAGTAATTTACACCACAAGGCTAAATCTCCTTTAAACGAGTCATTGTTAGT
ACCTTTACTAAAGAAATTATTAACAGCTGCAGTCTTTTCTGTGTAAGCATCAACTTTTGA
TATTTTTTTACACAATTTAAAAAATGTAGAAAATTTATTATCATCACTGTCTGCTTCATG
ATTTGTATCATTCTTAACTTCCTGTTTAATTTTCGTTTCAGATATTTTGGAAGAATTACG
TTGGTTTTTGATCTGTTTTGCCGTGTATTTTCCACTATTTTTCTCAGCATATAATTTTTC
CATTTCATTTAATTTCTTAAGTATGGATTCTTGATCATCCTGATTCAAACTATCCCAGTT
CCCAATGTCATCTATTGAATCTACACGTTTCGTAACAGGTCTTTGTTTTAAAAGAGCGTT
GACAAAGCAATCTATGTGAAACCATGATTTCATTTGTTGGTTATCTCCGTAAGGACTCGG
AACAACTTTCGCTATGCGTAATTCTCCGCTGTGGCAGTTCGTTTTGCATCCTTTACATGA
AGCACGGCCTCCTTTCGCTCGATCGACATAAAAAGGTGTTGTTTCCGACATCTTTCTATG
CACAATATGTTCCTAATTCATTTTATGAATATGATTCATACTTTGGAAGCGACGATATTC
TGTTGAATTGAATAATACGAATTATAAATCTATTACGTAAAAG
(3283 bp)

- SilkBase 1999-2023 -