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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_SariMG_comp29042_c1_seq4
Scaffold_id
NCBI non-redundant
(nr)		PREDICTED:_E3_ubiquitin-protein_ligase_UHRF1-like_isoform_X2_[Bombyx_mori]
Ontology
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0000790 C chromatin
GO:0000791 C euchromatin
GO:0000792 C heterochromatin
GO:0003677 F DNA binding
GO:0004842 F ubiquitin-protein transferase activity
GO:0005634 C nucleus
GO:0005657 C replication fork
GO:0005720 C heterochromatin
GO:0006281 P DNA repair
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006974 P cellular response to DNA damage stimulus
GO:0007049 P cell cycle
GO:0008270 F zinc ion binding
GO:0010216 P maintenance of DNA methylation
GO:0010390 P histone monoubiquitination
GO:0016363 C nuclear matrix
GO:0016567 P protein ubiquitination
GO:0016568 P chromatin organization
GO:0016574 P histone ubiquitination
GO:0016874 F ligase activity
GO:0031493 F obsolete nucleosomal histone binding
GO:0035064 F methylated histone binding
GO:0042393 F histone binding
GO:0042787 P ubiquitin-dependent protein catabolic process
GO:0042802 F identical protein binding
GO:0044729 F hemi-methylated DNA-binding
GO:0046872 F metal ion binding
GO:0051865 P protein autoubiquitination
GO:0061630 F ubiquitin protein ligase activity
GO:0090308 P regulation of DNA methylation-dependent heterochromatin assembly
Transcript
Level		FPKM:0.96 TPM:0.96
ORF EntryO_SariMG10570_5prime_partial:A_SariMG_comp29042_c1_seq4
Sequence
(Nucleotide)
GGGTTGAAGGCAAAATAGTGAGAATATGTTTTGATCCAGATGCAAATACATCACACAAGC
CAAATCCAGATTATTCAGGATATACAGTCGACGATAAAAAAAACACACAAAAATTGAAAA
TTAATGATGATGAAAACAAACCGCCTATTATTAGTTCCACAAATGGCGATAGCAAAGTGA
CAAGGAGTAAAGGCATAGCCAATTATTTTACAAGAGTCCCAAAAGGTAGGAAAAAATCCG
AAAAGGAAGCAAAGCCTGAAGAAATATTGAAAAATAATGACGAGAATCTGTTGTTTAAAG
TGCAGTTAGATGCAGACGACGAAGACTCAAAATTGTATTGCAAGTTAAAGGAAATACGGC
CACGCGCGCGATCTATTATAAAAATAAAAGATTTGAATATCGGACAACAAATTATGGTTA
ATTATAATCCAGAGGAACCGTTAGAAAAAGGTTTTTGGTTTGATTTCAAAGTGGCTGAAA
TAAAAAAATTAAGGGTAAATTATGAATTAGTAGGGACCCTTTACCTAGGTGCTGATGCGG
TTCCACAGCATGATACCAAAATAAAAGTTCAAGATAATATCTATGCTATTGAAGATATAG
TGCCTTTAAATGAAAGAACCATAGAGTACAATAAGAGAATGGAAATAGTTCCCGATAAAC
GTTCAATGCCATTAAACTGTTTGTCATGCCGTGATAATGACGAAGTTTTATGCAAGGATT
GTGGATGTTTTGTCTGCTTAGGAAAAGAATCTCCTGATAAAATTGTGCTTTGTGATGAAT
GTAATTATGGTTATCATATGACATGCTTAAATCCACCACTATCTGACTTGCCTGAAGAGG
ATTGGTACTGTCCTCTGTGTAAGAGGGATCCCAATAAAGTCGTTGCCCCCGGGGCTGCTA
AACAAACCAAAAAGTCTTCTTCTGCTTCGAAGGGTAGTCGAGATTGGGGCAGAGGGATGG
CTTGTATCGGTAAAACGAAAAGTTGCGCAATGCCAGCCAATCATTTTGGACCAATTCCAG
GTATAGAAGTTGGCATGTGCTGGAGATTCAGGATACAGTTATCAGAATCAGGTGTGCATC
GTCCACCAGTATCTGGTATACATGGCAGAGATATAGAGGGAGCGTATAGCATAGTTCTGT
CAGGTGGTTATGAAGACGACGTGGATAACGGCAATGAGTTTACTTACACGGGCAGCGGAG
GTAGAGATCTTTCTGGAAACAAACGCACAGCCGAACAATCATGCGACCAGACTCTCACCA
GAGAGAACAAAGCATTGGCTCGTAATTGTGCTGCGAATCGGATAAGTGAAGAGGGTGGAG
ACGCTGGTAAGAATTGGCGTGAAGGGAAACCCGTACGTGTCGTGAGATCTTACAAAATGC
TGAAACACTTTCCCAAATACGCCCCTAAAGAGGGAATTAGGTATGATGGTATTTACAAAG
TTGTCAAGTATTACCCTGAGAAAGGGCTCTCAGGTTTTCGTGTTTGGAAGTATCTGCTTA
GACGAGATGATCCAAGCCCAGCGCCGTGGGAAGCTGAACTCAATTTCCCCATAATTTACC
CAGATGGATATTTGGAGGCGGAAGCTGAGAAAAAAGCATTAAAAGAGAAAAGTTTGAAAA
ACACAAAAGGGAAAACTAAGAAACGAGCTCTCCGTGAAAGCAACCATACGACAGAATCAG
AGGGAGAATTGTCACCGCCAGTGAAAAAGAAAAAAGTACAAACAAAGAATGAGAACAAGT
TGAAGAAGAAGAATTGTCACCGCCAGTGAAAAAGAAAAAAGTACAAACAAAGAATGAGAA
CAAGTTGAAGAAG
(1813 bp)

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