SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_SariMG_comp28887_c0_seq5
Scaffold_id
NCBI non-redundant
(nr)		PREDICTED:_ATP-dependent_RNA_helicase_p62-like_isoform_X2_[Papilio_machaon]
Ontology
GO:0000166 F nucleotide binding
GO:0000381 P regulation of alternative mRNA splicing, via spliceosome
GO:0000398 P mRNA splicing, via spliceosome
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003729 F mRNA binding
GO:0004004 F RNA helicase activity
GO:0004386 F helicase activity
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005700 C polytene chromosome
GO:0005703 C polytene chromosome puff
GO:0005737 C cytoplasm
GO:0005875 C microtubule associated complex
GO:0006417 P regulation of translation
GO:0010501 P RNA secondary structure unwinding
GO:0016246 P RNA interference
GO:0016787 F hydrolase activity
GO:0019730 P antimicrobial humoral response
GO:0022008 P neurogenesis
GO:0031047 P gene silencing by RNA
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0050688 P regulation of defense response to virus
GO:0071011 C precatalytic spliceosome
GO:0071013 C catalytic step 2 spliceosome
Transcript
Level		FPKM:0.44 TPM:0.44
ORF EntryO_SariMG10094_complete:A_SariMG_comp28887_c0_seq5
Sequence
(Nucleotide)
CTGTTTCTGTTCCATCCACCGCCACGTCCGCCGCCATATCTGTTTCTGTTCCATCCACCG
CCTCCACCTCCGCTGCGGTCAGCCATTGATTGCAACTGAGGGCTTATTATCTGATTAGCT
TCTTGTAAAACGGAGACGAGATCTTTAGCTTGGCGGGAGTTGGATGGGGTAAAGAATGCA
TATGAAGTTCCTTTAGCTTTGGATCTTCCTGTCCTACCAATTCGATGAATGTAATCCTCA
GAGGAATTTGGATAATCAAAATTAATCACATATTTGATTCCATCCACATCTGTAAACATT
TATATATTATATTGTCTATAAATCTATAAACCTTTTATGAAATAAATATTTTTAGTTCAT
GATTTTTATAATACATGTTATTTATAAATATAAAAAACCAGGACCATAAACATTACATTA
AAAAATAATTAACCATGTTATTGTAACTCACAGCTGTATTACTTACATGAATGAGTTACA
CAGACAAAGGAAAAGTGAATATTTGCCTCTCACTGGGAACCCTGGAGTATTTCTTTCATG
GGCTTTTATTTTATAGGTTAGCTCTCTTTTGAATTTTTATTATGAAAGCCTCTTGAAATC
TCCATTTTTGGCCGAAACAGAAAACCCTTGACCTCTTGCTGATCTCTTAATATGTGGTCA
AGTTTTTCAACGATGCACAACTAGACTGAATTCCGAGTTATTAAATTGAACATTTAGTGC
ATCACCAGGTTTTCTACTCTCAAGTGTATCCGTGACCACGGACAAACCATCAAGCTTTCC
GGCCTCGGGTCCAATCTTAGTGAAAGGCACATTTGAGGCACCATAATATTGACGAGTTAT
TGCATTCTCAAGACAAATACCACTGCATTAGATAGACAATCGTCTCAGCTATTAATCCAG
ATCAGTAACATGCCTTTTAACTTCAGGCAGTAATCAAACAGAACACAATAACTTTCCGCC
AGTGCCTCAAGACCTCTGGCAGCAACATCAGTTGCTACAAGTATACTGGAACGACCCTCT
TTAAATTGGTATAATACTTCATCCCTTTCTTGCTGTGTTTTGTCACCGTGCATGCACACA
GCTGGCCATCCATATCGTCTGATATTTCTGGTAATGTTCTCCGCTTTTCTTTTAGTTTCA
ACAAATATAATGGTCTTTGCACCAGGGTCTTGGTTTTGCCCAATCTCTTGAAGAAGTACA
TTTAATTTGTTTTCTTTTTCATGTTCTTGACAAACATCTACAATTTGAAGGATGTTATGA
TTTGCAGATAGTTGAAGTGATCCAATATTAATTTGGACATAGTCTCCTAAATAATCCTCT
GCAAGTTTCCTTACTTCTTTTGGCCATGTTGCAGACCACATAAGAGTTTGCCTATCAGGG
CGTATTTGGTCGATAATTTTCCTAATTTGTGGCTCAAAACCCATATCCAACATGCGATCA
GCTTCATCAAGAACTAAATAGGTGCATCTTTGTAAGTTTGTAGTACCCTTTTCCAAGAAA
TCAATTAATCTCCCAGGAGTAGCAATAACAATCTCAACACCTCTTTCCAAATCACGGGCC
TGTTCTCTTTTAGGGGCACCTCCAAACACACATGTATTACGAACATAAGATGAATTGCCA
AATTCTGAAGCAACCTGCTGTATTTGTTGAGCAAGTTCTCTTGTTGGAGCTAGAACTAAT
GCAATAGGACCATCACCACGCCGAATGGGAGGCTGATTATTAATATGTACTATGGCAGGT
AAAATATAAGCCAAAGTTTTGCCTGAACCTGTTTGGGCCACACCAACCAAGTTTTTCCCT
GACATAGCGATTGGCCATCCTTGAGCCTGTATAGGGGTAGGATCTTTGTAACCCATACTT
TTTATTGCTTGACACACATAATCTGGAAAGTTTGCCTCTTCAAAATGTTCAATAGGATTA
GGTACTTCAACTCCACTAACAGTGACTTCGTGTTTGTTTCTATAGTCCTCTACTTCATAT
GGTGACCTATCCAAGACTGATTTATGAGGATTATAAAAATCTTTGTTAAATGGTTGGAGC
GACAGCGAATCCCAATTAGGGCGTCGCATATTTTGCCCACCAGCGAAATCTTTCTTGGAG
CCAAAGCCACCACCTCCATATCTACCACCCCCACTGCCTCCATTGCCAAATTTGTTACCT
CCACCAAATTTGGAACCGCCGTTTCCACGGCTATTATTCCAACCACCAGACATTTTCTAT
TTTAGGTTAGAACTGATGATGTTAACAGTAATTTTAGATTTATGTCCAAGCAGGGTCCGC
CTCGACCACTGCTGTAAGTTGAA
(2303 bp)

- SilkBase 1999-2023 -