SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_SariMG_comp15494_c0_seq1
Scaffold_id
NCBI non-redundant
(nr)		PREDICTED:_splicing_factor_3A_subunit_2_isoform_X1_[Amyelois_transitella]
Ontology
GO:0000389 P mRNA 3'-splice site recognition
GO:0000398 P mRNA splicing, via spliceosome
GO:0003676 F nucleic acid binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005681 C spliceosomal complex
GO:0005686 C U2 snRNP
GO:0006397 P mRNA processing
GO:0008270 F zinc ion binding
GO:0008380 P RNA splicing
GO:0010976 P positive regulation of neuron projection development
GO:0016607 C nuclear speck
GO:0030532 C small nuclear ribonucleoprotein complex
GO:0044822 F RNA binding
GO:0046872 F metal ion binding
GO:0071004 C U2-type prespliceosome
GO:0071013 C catalytic step 2 spliceosome
Transcript
Level		FPKM:13.78 TPM:13.82
ORF EntryO_SariMG1307_complete:A_SariMG_comp15494_c0_seq1
Sequence
(Nucleotide)
TTTTGTTGTTCTATAAAATATATATTTAAATATTACATAGATGGTGGAGGTGGTGGCACA
GGCAATAGAGGTGGTGGTGGTGGTACACCCATTAGTGGTGCTCCAGGTGGTGGTGGAAGC
CTCATACCATGATTCTCCCACATCTTAGGTGGAGGAGGTAATCGTAATGGCTCAATCTTA
AATGCAAATTGTAAGAAAAACTGTTTAGTATCTTTATTCCAATGAGTCCAAAATTTAGTG
TCATGTTTTTCCACTTCTCTACTGGGAACTTTAAATGCAATGGTTTCATAGGGTTCAGCA
GCAAACAGTAGATATTGCCATCTGCGATCTGGTGGTTCTATTTTTTGTTCATAAGCTGAC
ATAAAGCGATGCCTTGGTTGCACACCCTCTGCAATTTCTGGGTAATCAACTTGGAAAAGT
AAACTTTGTTGACCATTCTCGGGATCTTTTTGCTTAGTTACTCTATATCCAGGTCGTCCA
ATTTTAACAAACTTCTTAGGTTCAATCCTTGGTTTTTCTGGTGCAAGTTGCTGAGGTGCT
TCCTTAGCTTCTTTAGCAGCTCGACGGGCTAAATTAGCCTGATGTTTCTTTCCTTGAGTA
TGTGCTAAGTAGCTTCCCTCATTGTTGTGCAATGTAAGACATAGTTTACACTCATATGAG
CCTAAATGATTTTTCATAAAATATGGGTCTTTATTCAAGTCAATCGTTTCGAGTGCAAGT
TGTCTCAACCTTTCGCGCCGGTCTCTGTTGCTTTCGGACCATGACGCTACACCTCCTCCT
CCAGTTTTACCGCCTGGACGGTTTTGGAAATCCATCTTATTGTATGGTTATTTCAGATAC
CAATGAATTGTATTTATACGAATATACTTGAATTCATCACCGACAAACTTACTAGAGAAA
ACTTAGAACAAAAACACAAGAACCAAAAACCCAG
(934 bp)

- SilkBase 1999-2023 -