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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_SariASG_c9423_g1_i1
Scaffold_id
NCBI non-redundant
(nr)		high_mobility_group_protein_HMG-I/HMG-Y_isoform_e_[Mus_musculus]
Ontology
GO:0000785 C chromatin
GO:0001077 F DNA-binding transcription activator activity, RNA polymerase II-specific
GO:0001205 F DNA-binding transcription activator activity, RNA polymerase II-specific
GO:0003677 F DNA binding
GO:0003680 F minor groove of adenine-thymine-rich DNA binding
GO:0003682 F chromatin binding
GO:0003906 F DNA-(apurinic or apyrimidinic site) endonuclease activity
GO:0005634 C nucleus
GO:0005694 C chromosome
GO:0005925 C focal adhesion
GO:0006284 P base-excision repair
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006366 P transcription by RNA polymerase II
GO:0007283 P spermatogenesis
GO:0008134 F transcription factor binding
GO:0008285 P negative regulation of cell population proliferation
GO:0019899 F enzyme binding
GO:0030374 F nuclear receptor coactivator activity
GO:0035985 C senescence-associated heterochromatin focus
GO:0035986 P obsolete senescence-associated heterochromatin focus assembly
GO:0042974 F retinoic acid receptor binding
GO:0042975 F peroxisome proliferator activated receptor binding
GO:0045892 P negative regulation of transcription, DNA-templated
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0046965 F retinoid X receptor binding
GO:0051575 F 5'-deoxyribose-5-phosphate lyase activity
GO:0090402 P oncogene-induced cell senescence
GO:0090575 C RNA polymerase II transcription regulator complex
GO:2000774 P positive regulation of cellular senescence
Transcript
Level		FPKM:1.56 TPM:1.51
ORF EntryO_SariASG1080_complete:A_SariASG_c9423_g1_i1
Sequence
(Nucleotide)
CGGGGCTGCGCTCCTCTAATTGGGACTCCGAGTCGGGGCTATTTCTGGTGTTGGCGCGGC
TCCAAGAAGGCACTCACTGTGTGCTGCCCCACACATAGAGAAGGAGAATGAGCGAGTCGG
GCTCAAAGTCCAGCCAGCCCCTGGCCTCCAAGCAGGAAAAGGATGGGACTGAGAAGCGAG
GCCGGGGCAGGCCACGCAAGCAGCCTCCGGTGAGTCCTGGGACGGCGCTGGTCGGGAGTC
AGAAAGAGCCCAGTGAAGTGCCAACTCCGAAGAGACCTCGGGGCCGACCAAAGGGAAGCA
AGAATAAGGGCGCCGCCAAGACCCGGAAAGTCACCCCAGCTCCAGGGAGGAAACCAAGGG
GCAGACCCAAGAAACTGGAGAAGGAGGAAGAGGAGGGCATCTCCCAGGAGTCCTCTGAGG
AGGAGCAGTGATCACCACTCGCAGTGCCGCCTGCTCCATAGCCACTGAGGAGCAGCTGTC
CCCTGGGACTGGAAGCCCTGCTCCCAGGCCCCTCCCCGCCCCCACTGCACACTACCGCAC
CAGGCACCAGCTGCAGGCTCTGCTCCGCAG
(570 bp)

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