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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_SariASG_c38719_g1_i2
Scaffold_id
NCBI non-redundant
(nr)		PREDICTED:_U5_small_nuclear_ribonucleoprotein_40_kDa_protein_[Papilio_machaon]
Ontology
GO:0000375 P RNA splicing, via transesterification reactions
GO:0000398 P mRNA splicing, via spliceosome
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005681 C spliceosomal complex
GO:0005682 C U5 snRNP
GO:0005732 C sno(s)RNA-containing ribonucleoprotein complex
GO:0005737 C cytoplasm
GO:0006396 P RNA processing
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0044822 F RNA binding
GO:0071011 C precatalytic spliceosome
GO:0071013 C catalytic step 2 spliceosome
Transcript
Level		FPKM:19.82 TPM:19.19
ORF EntryO_SariASG16141_complete:A_SariASG_c38719_g1_i2
Sequence
(Nucleotide)
GCGTCATTGACTCCTTGCCAAACAAAAAAGAAAAAAAAATAAGTAATCTGTACCAAAGAC
AAAATACAAATACTGTTCTATTGTAGGCACAGAATAATATTATTGTAGGTTATTTGTTTG
TTTCTTCAAAATTGTTTTTATTTTGTTCAAAAGTTTAAACAATGCCCGAAATGGAAATAA
AAAGAAAGGCTGATGATTTGTCAATGGTGCCATCAAAACGCACCCGTCATGAAATCACTG
TTGTTGGTACAAGAGAAAAAGCTGTGGTTTCATCTTCAGTCCCTCGAACATCAAACCTTT
ATGCACCAATAATGTTACTAGAAGGTCATCAGGGAGAGATATTTACAGCAAAATTTCACC
CCGAGGGGAAACATTTAGCTTCAGGTGGATTTGACAGACAAATTTTCATATGGAATGTCT
ATGGACAGTGTGAGAATGTGATGGTGATGAAAGGTCACACTGGTGCTATCATGGAGCTAT
GCTTCTCTCCTGACGGTTCACATTTGTACACATGTGCTACGGACAATACTGTTGCAGTCT
GGGATGTTCCTACCGGAATGAGAATCAAAAAGTTAAAGGGTCATACTAACTTTGTCAACT
CTGTCTCAGGAGCTAGACGAGGACCAGAACTGCTTGTGTCAGGTTCCGATGATAATACAA
TAAAGCTATGGGATGCGAGGAAACGAAACGCGATAGGGTCTCTTGACAGCGGGTACCCGG
TCACCGCGGTACTATTCAATGATACCGCTGAGAAAATCATATCCGCTGGCCTCGACAACG
TTATCAAAGTGTGGGACATCAGGAACAATCAGATTGCGTACACTATCAAGGGTCACACGG
ATACTGTTACGGGTCTGTCGTTGTCGTACGACGGGTCGTACTTAGTGTCGAACTCGATGG
ACAGCACCGTCCGGATCTGGGACGTGCGTCCGTTCGGTCCGGCGGAGCGCTGCGTCAAGC
TGATGACCGGACACCAGCACAACTTCGAGAAGAACCTGCTCCGGTGCGCCTGGTCACCGG
ACGGGTCCAAGGTGGCCGCCGGTTCATCAGACCGGTTCCTTTACATCTGGGACACGACGA
CCCGTCGCGTGGTGTACAAACTGCCGGGACACAACGGCTCCGTCAATGACGTCGACTTCC
ACAGAACAGAGCCCGTTGTCCTCTCCGCCTCCAGTGACAAGCAGATATTCCTCGGGGAGA
TCGATAATTGATCTACAGACATTTCCGTTGACACTTTCGAGTCGTGTGAACAAAATATCC
CCGGATAATTAGGTCCCTCCCAAGACTGAGTTTTTCTCATGTGTTCTAAGAAGAAATTTT
TGTACGCTATTCAAATACAAAAATGGATTTCGTACAAGTACTAAACGATCATTAAATTAT
TTTTCTTTACAAAACGTATTGTTTAAAATTACCTTCACTACAATTTCATAAAGTGTTTTC
GTTCCAACAGAGAGAGATACACGGTTCGTTATATTAAAAATAATTTTATTATAAAACACA
CGACGGAAAAACGTCTGTTCGTAAGGGGCCTTATGTCAATAGTGTACCGTTATTATTTTT
ATCAAGTCCGTATAGAGTAAGAATTATGTGAAATGTAAAATATTAAGTTAATCTATGTTT
TTATAAATTTATTATAAGTATTGGTGTACTTTTTTAAAAATTTAGTGCTTGTTTTGAAAA
TGAAAAAGAACTTCACGACTACTACACGACTAACCATAATCACACCAAAATCACAGATCT
GTATTTCACTGTGCCCTGAAGTAAAAATTAATAATTGATTCAGCGAAAATAAAACCAATT
TCAATCTTATTAATTGATTT
(1820 bp)

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