SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_SariASG_c38612_g1_i5
Scaffold_id
NCBI non-redundant
(nr)		PREDICTED:_E3_ubiquitin-protein_ligase_TRIP12_isoform_X1_[Papilio_xuthus]
Ontology
GO:0004842 F ubiquitin-protein transferase activity
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0006281 P DNA repair
GO:0006974 P cellular response to DNA damage stimulus
GO:0008270 F zinc ion binding
GO:0009790 P embryo development
GO:0016567 P protein ubiquitination
GO:0016874 F ligase activity
GO:0042787 P ubiquitin-dependent protein catabolic process
GO:0046966 F thyroid hormone receptor binding
GO:1901315 P negative regulation of histone H2A K63-linked ubiquitination
GO:2000780 P negative regulation of double-strand break repair
Transcript
Level		FPKM:11.19 TPM:10.84
ORF EntryO_SariASG15866_complete:A_SariASG_c38612_g1_i5
Sequence
(Nucleotide)
GCCAACCAGCTGTGTAGAATGGATTGAAAAATAACTCTGCAAGCGTAGCTGTCCTTGATG
TGTCATCCATTACATTATTTTTTATAAACGTTCTATTTGCATGATTTTAAAACTCATATT
ACACAAAATAATATACATTTATACGGGCCCGTGTTATTACTTATTTGCTTACGATAACTT
TGTGGTGTGTGTCAATTTAGTGCGTACTTTGCAAGTGTAGTGATTGTGATTGTGTCAGTG
TGAAACGTTAAGTTGGGATTCGGGTGGTAATGTTGTAAGATCGTGGAGTTCAAAGTATTG
GATGCGGAGGCTGTGTTGTAGCGCTCGCCCTGGCATGGTGCCGGGCAGGTAGCGCGCGCG
GGCGGCCTGCGCAGGCCCCACACAAGCAGCCGCGTGTGTCCCCCAGCGTCGTCTATGGCC
GAGCAACACACTACACCGTCGTCACACTCTGCACTCACGAGAGAGTCCAGCGGGTCTTCT
CCTAGCAGGGTGGTGGGCGGTCGGTGCTTGCGTCAAGTGCGTCGAGCGAGCCATAGCCGT
CGAAATAAACACAACGCGACATCGCCCCTGCCTCGCTCCACAAGCAGGCATTCGTCAACC
CTAGTGTCAGATACTGAGCCACATACTCACATCGAATTGCGTAGAAGTTCACGTCTAATC
AACTCTTTGCCTAGATCCGACTATTCCATCACTGAGCGCTGGTCATACGGAACGGACGTA
TACGAAACCCGTTGTGATACAAGTTTCAAGAGTGGAGATACGTCTAAATCACATTCATTG
TATACCTACCCGTCAGAGTATAGTAAACAGGAACGTACGTCTTCGCATGAACGTAAAAAA
CGCAAAGTTACATCGACTAAAAGCACAGAAGAGTGCGTTGCTTATTGTACACGCTCACGG
ACTGCTCTTAAATCCAGTGAGAGTGCTTGTGAGCAAATTTCGAATAGTTTAGTAACACAA
ACTTTACCACAGTTTTCATCGAGTCATAGTGCCACAGCGACTTCGACACAAACGAATCAG
CCCGAAAGCGGCCTACTTCCATTAGACGAAAGAGATTTCGCATATTCTCCATTCAGTTCA
TCAACTGTCACAGAGTTACTTGATTCCGATTACTCTGTGTACAGTCCAACAGCTAGCCGT
AGAAAGGGTAAAAAGCGAAAACGATCATCGTATCGTTCATTATCAAGCAGAAAAAATAGT
TGTCTGATAAATATTGAAGATAATAGAAAAAAGTTTAAAACCGGCTCACATAGTAAAGAT
ATAGAAGATACCGGTGAAATATCATTCACCCGGGCTCCTATTAAATACGATACCGAAAGA
CGCGACCAACCGAGTGCAACACACATATTGTGTACATATCGGCTGCGCAACAGAAATCAG
CGAGATCTTGGTCCTCCCACTTCAACAGTCGTCAGAGATACTTCAGCGAGTCCGTCGACT
AGCGAGACGGCACTTTTCTCACCGCTAGCTGAACGTAAGAGTGCAATCGACTCACACGGG
AGAACAGAAACTCCACCACCGTTTAAGGATATTCAAGAAGCGAGTTCCTCAAAGGGGCAT
AGCTCAGGAAGCAAGTTGTTAATAGTACCACGTGATCTTCCATATCTACGGCAGACTAAC
GCACGGAGGAGTATCGCTGCTGCAACGGGTGCAACACTGGGTGCTTGCCTGACGAGAGGA
GCCGCCACTAATCAGCGTCAGAGGCAAGATTCTGCTTCTAAGCGACAGGTGGCAGGCGCG
GGCAGCGAGAGCGCTAGCGGCAGCGCTGCAGGCGGGCGGCGGCCGCGGTCTCGCGACATG
CCGCAGCCGGCATCCACGCGCAAAGATAAACGAGGTAAAACCAGTCTGGGTTCGTGTGCC
AGCTCTGGTGGTGCGTCCAGCCGGTCTCACCCCCAGACTTTAACCACGGGTGCCATTGCA
TCCACATCGTCCACGCCGCCGGCATCTGCGTCAGCTGCTACAATGCCTGACAACGGAAAC
AGCGATGCCAAGCCGAAAACCAAAGCGTCCTCGTCTGGTGAAGAGTGCGCCGGCGGCGGC
GTCGCGGTTGCCGGCGGTGTGGGCGGCAGCGGGCTCGGAGGCGCGGCCGCAGCGCTCAGC
GCGCTGGGCGCCGCCGCCGAGGAGTCCTCCTCGGAAGAAGGCGAGGTCGGTCGGCTGCAA
GCACTGCTCGAAGCACGCGGGTTGCCACCCCACCTGCTGGGCGCGCTCGGCCCGCGCATG
CAACACTTACTGCACAGGACCGTCACTGCTAATTCCGCTGCATCGAAAGCAGCTCAGCTG
CTTGCTGGACTACAAGCTACAGGTGATGAAGGTCAACAGTTACAAGCTGTTATAGAAATG
TGCCAACTGCTAGTGATGGGCAACGAGGATACGTTGGCCGGATTCCCGGTGCGGCAAGTC
GTACCTGCCCTTGTCAATTTGTTGGCTGCAGAACATAATTTCGATATGATGAATCATGCG
TGTCGCGCTCTGACATACATGTTGGAGGCTTTGCCCCGCAGCAGTGGCGCTGTGGCCCTC
GCTGTGCCGGCATTCCTCGACAAACTCCAAGCCATCACGTGTATGGACGTTGCAGAACAG
AGTCTCACCGCACTCGACATGCTCTCCCGGAGGCATTCGAAGGCTATATTACAGGCGCGA
GGAGTATCCGCATGCCTGACATATTTGGATTTCTTCTCTATAAATGCGCAACGAGCTGCA
TTATCAATCACTGCCAACTGTTGCCAAAATCTCACATCAGATGAGTTTCACCTAGTCCGT
GATTCACTACAATTATTAGCAAACAGATTAACTCAGCAGGACAAGAAGTCTGTGGAATGC
GTGTGCCTCGCGTTCTCCCGGATGGTCGACAGCTTCCAACATGATCCGGCGCGTTTACAG
GAAATAGCCACGCCCGAACTTCTGACCAATTTACAACAACTTCTGGTCGTCCAGCCACCA
CTGATATCCGGAGGTACATTCATCACTGTACTACGATTGTTGTGGGTGATGTGCGCCGCC
TGCCCGCAGTTGGCTCTCGCCTTGCACCAGAGATCCATTGCTGACACTTTGCTGTGTCTG
CTGACTGGCTCCACTCTTCATCAGGAGCAAGTGGAACTTATCCCACGGCCGCCTCAAGAG
TTGTATGAGATAACGTGTCTGATTGGTGAACTGATGCCGAGGCTGCCCACGGACGGGATA
TTCGCGGTCGACGCGCATCTCGACAGGCCTTGGTCCGCGCCCACAGAACGGACTGCGCAT
TGGCAATGGAGAGACGATAGAGGTGTATGGCGTTCGTACTCGTGGGCGGAGAGCCGAGCG
CTCGAGGCGGGCGTCGCCGCCGGCGAGGAGGAGGTCTGCCTCGCCACGCTGGGCCGCTCG
TACACCGTGGACCTGACCGCCATGCAGCAGCTGAATGACCACACGGGCACCGCGCGCCCC
GTGCAGCGCGTCGCGCCACAGCCCAACCCTTCAGATCAGGGTAACGCTGCTAATGGATCT
ACACCAGATCCACGTATCGCGATGGTGCGGTCGAGCACGTCGCTGGTGCGCGCCCTGCTC
GCCGTGCTGCACGAGGTGTACTGGAGCTCCGCGGGCCCAGCTGTTCGCTCGCAAGCGCTT
AAAGCGATCCTGCGCTGCGTTTACTACGCTGATGCAACACTCCTACGACAAGTACTCAAG
ATGCAGGTGATATCATCACACATAGCGGGTATGATGGCGTCGAGTGACCTGCGCATAGTG
GTAGGGTCGCTGCAGTTGGCGGAGATACTGATGCAGCGACTGCCCGAGGAGATGGCGCTT
CAGTTCCGTCGCGAGGGCGTGCTGCACCAGGTCGCGCAGCTTGCCGAACGCGCCACGCCG
CCTAAACAGAACAAACTCAAGTCACCGAGCGGTGCCACCCTACGCTCGAGCGGCGGAGCG
ACGCCGCCCGTCCCCGCCGCCGCCCTCGCCTCCGCCTCCGCCTCCACATCCACCACTTCG
ATCGAACACAATAATTTGTCACTCGCATTTTCCGCATCCGGGTCTTTCGTTACTACTAAT
ATACCGATTGGTAGCGATGGTAGTGGTTCTGAATCTGGCCCAGCATCGAACTCGGCACAT
CCTCAAATAGCTACATCAGCTCATAGGTCTAACAGTCCGCTACAGCTGGCGGAAAAACTG
AAGCGTAAGCGCGCAGTCAAGCGATCCGGTGGTGGCGGGAGTCGGCACGCGCGCCGCCGG
GACGAGGTCGCTCACGCGTCATACGCAGCCGTGCCGGCGCCGCAAGCGCACGTGCATCCC
GCGCACCAGCCGCATCCCGCTTACACAGCCCATCCAGCGCATCTCGCCGTCTCACATTCG
ACGCCGCACGGTTCGGGAGTACAGTGCGCGGCTCGATCTACCAGTAGACCGGGAGGGCCG
TCCAAGACGTCCTCATTCCTCTCCTCACTGAATCCGACGCGCTGGGGGCGAGCGCCTCAC
GCGCACAAAGACTCCGCTCTACTCGCCTCCCCGCACACCTCTGCCAATCTCTCTGTGCAG
AACAAAGAGAAGGTGCGCGAGTGGATTGAGTGGCGCGCGGCACGTCTACAACGCGAGTGG
GGCGGCGGCACCGGGTGCGGCGGAGCCCTGGAGGCGCTGGCGGCGCTCGCGCATGCGCTC
CCGCACCGGCATCACCGACGCGCCGCACTCGAGACTCTGCGGGAGACGTTGCTGCATCAC
GACGTCTCACCTTTCGAAGTTAATCACTCTGGAGTGCTGGGCGCCGTGCATCAGTTCCTG
ACAGGCGGAGAGTGTGACAAGGAGTCGACCGGTACCCGGGAACCAGATGGTGAAGCATCG
TCCGGTGTCGACGCCTGCGAAGACCGGCTACGGCTTTTCCTTCATGTTTTCGCTGAAATG
CCGCTTGGACCTGATGTGAGTGAATGGATCGAGTCGGGAGGCGGCGTGAACGTGAGCGGC
GCGTCTGCGATGACCGCGCTCGTCGCCAAGGTGAACGCGTGCGTGTCGCACCTCGAGCAG
TTCCCGGTGCGTGTGCACGACCTGCCCGCGCGTCCCGCCACATCCGCACTCAAGTTCTTC
AACACTCATCAACTAATGTGTGATCTCAAACGTCATCCGACTTGCAACAATTTGAAGCAG
TGGAAGGGAGGCGTTGTACGGATTGACCCCTTAGCATTAGTACAAGCCATCGAGAGGTAC
TTGGCCCAGCGCGGATACGCTAGCGGCCGTACGCGCGAGGGCTCCGCGGGCGGCGCACAC
TCTGACGACGATGCGCCGTCCGACGACGATGTCGACGACTCGCTGCACACCCCGCCCCAT
CACCACCCCGTCGAAGCTGAACATAAATTGGAGTTCCTGATTGGTGATACAGTGTTGCCA
TATAATATGACTGTGTACCAGGCTGTGAGGCAATTTGGAGAACAGATGGATGCTGACACT
GACACGGAAACACCACTCTCAAATGCAGGCATTTGGGTGCAAACGCACACAATTTATTAC
CGAGCAGTAGAAGGTGGAGAACAGCCTCGAGTAGACACAACTACATCTAAAAAAGGAAAA
GGGCAACCAACAAAACTATCTTCTAGACGAAAACCAGACCTGTTTTGGAATGAGGGAATA
GTACCTAGTCGAGAATCGCCGCTAGTAATGATCCTGCGATCTCCGTTGTTAGCGGAGGGG
GAAGTAAAGGACGCGTCGTTGCCGGCACTAGGGTTGTTGCGTGCGCTCCACGCGCTCTCA
CGGCACTGGCACACGCTGTACCGCGCCGCCTGTCTGCCCGACCACCGCCCGCTCGTACCC
AACCTCGACTTCGTCAATGCTAAGCTCGCTGCCAAAGCTAATCGGCAGTTGCAGGATCCA
CTCGTGATAATGACGGGAAATCTTCCAGCATGGTTGAAGAAAATTGCTTATGCTTGTCCG
TTCGTGCTTCCGTTCGAGTGTCGTCACTTGCTTTTCTATGTGGTATCATTCGACCGCGAC
CGAGCGCTCCAGCGGCTACTGGAGGCGGGCGGCGAGCGCGGCGCCGTCGCTGCGGGCGAA
GCGGAACGCGTCGCGCCCCGTCTCGACCGACGCAAGCGCACTGTGCAGCGCCACAACGTG
CTGCGCCAAGCCGAGCACGTCATGCACGAGTTTGCACACACCAAAGCGTTGCTCGAGATA
CAGTACGAGAACGAGGTCGGAACAGGTCTCGGTCCCACGCTAGAGTTTTATGCCCTAGTC
TCCCAGGAGCTGCAGCGCGCTGATCTCGACCTCTGGCACGGCAGCGAGAATTTCAAACAG
AAGCCGAGCTCGTTCGGCGGTGAAATAGTAAAATCTCACCCGCCACCGCAAACGGATCGC
AGCCCAGACGCGGCGGCCAGACTTGCCTCTTCAGTTCGCGATACGCTGAATATTGACGAG
GATCACGCACGCGCTTCCCTGCCCCCTTCACTGCCGGCATCTCAACCCGGGTCTCTCCCC
GCTTCACCACCGGCGTCACTTCCGGCTGATCTTGATAAAGAAACTTCCGCCCCGTCCCCA
CCTCCCGACGCTGCCTGCGTCTCTTGGCCCTGCGGCCTCTTCCCACAAGCTATTGGGCGT
AACTCGCGTGCCTCCCACATCTCGCGTGTCAAGGCCAAGTTCCGTTTCCTTGGCAAGTTT
ATGGCAAAGGCTGTTATGGATTCGCGTATGGTTGATATTCCACTATCGGTCACTATGTAC
CGTTGGGTGGTGAACGAAGACAGGTGGCTGAATTTAAGCGATGTGCGACACGTGGCACCG
GAGCTGTGGCGTTCTCTATGTCGGCTGCGTCGTGTGGCTGATCGTGCACAAATGATCGCT
GCCGATTCTAGGCATACGACTGATCAAAGAACACAATTAATAAGCAATCTAGAACTTGAC
GGGTGTCCGATCGAAGAACTTGGCTTGGACTTCATATTACCGGGTGACGGATGCACAGAG
TTGCGCCGCGGCGGCCGTGACCTGCCCGTCACTGCACACAACCTGCACAACTACATTGAA
CTAGTGACGCATTGGTTACTCTATGAAGGAGTGACCAAGCAAATGGAAGCATTCAAAGAA
GGATTTGAATCAGTATTTCCCCTAACCAATCTCAAAATATTCTACCCTGAAGAATTGGAA
CAAGTCTTTTGCGGAAGTCCATCAGGAGGGCGTGAGCAACGCTGGGATCCCCGTATGCTT
GCGGAGTGCATTCGACCGGATCACGGATACAACGCAGAGTCTCGAGCCATTCGCATGCTC
ATCGATATACTCGCCTCTTATACACGCGAAGAACAACGCCTGTTCCTACAGTTTGTTACA
GGAAGTCCACGTCTACCAACAGGAGGTTTCAAAGCTCTCAATCCACCGTTGACTGTTGTA
CGTAAGTCGCTGGAGTCGTTAGATCCAGATGAGTATCTACCATCGGTAATGACGTGCGTC
AATTACCTGAAGCTGCCAGACTACAGCAGTTCAGAAGTGATGCGCGCCAAGTTACGCCTC
GCCGCTTCTGAGGGGCAACACTCGTTTCATCTGTCGTGAATGACTTATAGTTTCTAATCA
TTTGCGGATAAATTTTATCGACCTTTCAATGTTATTTGAGTACATGCGGTATGAATGCGG
TTAGTGATATTTATAGTATAAATAGTGCTATACCTTAAAGTGCGCACGCTCCGAATGACA
GATGTGTTTATGTGCAATCAAAGTGAATTTATTATACCTATAAATTTATATGTTGGACAC
TAAAAGTGCTGCTGTTCTGTAATTTTGTTTATGCTTTGGATTCTTTTTAGATTACATAAA
TGTGTTTATATTATATTTTGTGTTAATATTATATTTTGTGTTAATTTAATGTGATAGCTT
TGTATATTACTTTATCTATACACCAGAGAGACTATTCGGTTCCATTAGATTTATAATAAT
AATATAATGCAGACAAGAAAACGTCAGCTGATTAAAGCAGTTTTACTTAGAAATACATTA
TGCTGCTCCCTCGGCGACTTATTATCTGTCTTTGCTATAAAAATGCGAATCGATTTTATC
CTGTCTGCAAGGTAATCTTCTTAAGTACTGTGTAGTTTTGTCCCTATTAAATGGACCAGT
ACATTTACTCCTTATTGGATCACTGGAATACTCTGAGGATCCTATAATTAAAATAGCATT
TATTACCAAACGGTGC
(8116 bp)

- SilkBase 1999-2023 -