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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_SariASG_c38612_g1_i4
Scaffold_id
NCBI non-redundant
(nr)		PREDICTED:_E3_ubiquitin-protein_ligase_TRIP12_isoform_X1_[Papilio_xuthus]
Ontology
GO:0004842 F ubiquitin-protein transferase activity
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0006281 P DNA repair
GO:0006974 P cellular response to DNA damage stimulus
GO:0009790 P embryo development
GO:0016567 P protein ubiquitination
GO:0016874 F ligase activity
GO:0042787 P ubiquitin-dependent protein catabolic process
GO:0046966 F thyroid hormone receptor binding
GO:1901315 P negative regulation of histone H2A K63-linked ubiquitination
GO:2000780 P negative regulation of double-strand break repair
Transcript
Level		FPKM:2.58 TPM:2.50
ORF EntryO_SariASG15861_complete:A_SariASG_c38612_g1_i4
Sequence
(Nucleotide)
CATGTATGCTGGTAATAGGAATGTATCGATATTGAATGAATAAAAAAGAAAAACTAATTA
TTTTCAATACATTAAAACAAATATAATACTAATATGACAAATATGATCTTAATTCTCTAA
CTCCACACACATAATCATATTCTAGTTAAATTGCATTCGTAATTTTTGACAGAGCTAGGG
TTGTCTTTGAATTAATAAATTTCTTGTTGACACGCCCCACATTATTACTAACGGGTACTG
GTTGATGCAAGGGTTTGTCCGGGCCTGACGTCACTAAAATGGCAGCCATGCGCATTGACA
ATATGCGGGGATTGTACGTTGCAGGATAGTTAGACTCGTTATGTCAGTGTTGTCTCAAAT
GAGTTTGTTAGTGATTAAAATATTTTTGACGTGATTAGATCCACGTATCGCGATGGTGCG
GTCGAGCACGTCGCTGGTGCGCGCCCTGCTCGCCGTGCTGCACGAGGTGTACTGGAGCTC
CGCGGGCCCAGCTGTTCGCTCGCAAGCGCTTAAAGCGATCCTGCGCTGCGTTTACTACGC
TGATGCAACACTCCTACGACAAGTACTCAAGATGCAGGTGATATCATCACACATAGCGGG
TATGATGGCGTCGAGTGACCTGCGCATAGTGGTAGGGTCGCTGCAGTTGGCGGAGATACT
GATGCAGCGACTGCCCGAGGAGATGGCGCTTCAGTTCCGTCGCGAGGGCGTGCTGCACCA
GGTCGCGCAGCTTGCCGAACGCGCCACGCCGCCTAAACAGAACAAACTCAAGTCACCGAG
CGGTGCCACCCTACGCTCGAGCGGCGGAGCGACGCCGCCCGTCCCCGCCGCCGCCCTCGC
CTCCGCCTCCGCCTCCACATCCACCACTTCGATCGAACACAATAATTTGTCACTCGCATT
TTCCGCATCCGGGTCTTTCGTTACTACTAATATACCGATTGGTAGCGATGGTAGTGGTTC
TGAATCTGGCCCAGCATCGAACTCGGCACATCCTCAAATAGCTACATCAGCTCATAGGTC
TAACAGTCCGCTACAGCTGGCGGAAAAACTGAAGCGTAAGCGCGCAGTCAAGCGATCCGG
TGGTGGCGGGAGTCGGCACGCGCGCCGCCGGGACGAGGTCGCTCACGCGTCATACGCAGC
CGTGCCGGCGCCGCAAGCGCACGTGCATCCCGCGCACCAGCCGCATCCCGCTTACACAGC
CCATCCAGCGCATCTCGCCGTCTCACATTCGACGCCGCACGGTTCGGGAGTACAGTGCGC
GGCTCGATCTACCAGTAGACCGGGAGGGCCGTCCAAGACGTCCTCATTCCTCTCCTCACT
GAATCCGACGCGCTGGGGGCGAGCGCCTCACGCGCACAAAGACTCCGCTCTACTCGCCTC
CCCGCACACCTCTGCCAATCTCTCTGTGCAGAACAAAGAGAAGGTGCGCGAGTGGATTGA
GTGGCGCGCGGCACGTCTACAACGCGAGTGGGGCGGCGGCACCGGGTGCGGCGGAGCCCT
GGAGGCGCTGGCGGCGCTCGCGCATGCGCTCCCGCACCGGCATCACCGACGCGCCGCACT
CGAGACTCTGCGGGAGACGTTGCTGCATCACGACGTCTCACCTTTCGAAGTTAATCACTC
TGGAGTGCTGGGCGCCGTGCATCAGTTCCTGACAGGCGGAGAGTGTGACAAGGAGTCGAC
CGGTACCCGGGAACCAGATGGTGAAGCATCGTCCGGTGTCGACGCCTGCGAAGACCGGCT
ACGGCTTTTCCTTCATGTTTTCGCTGAAATGCCGCTTGGACCTGATGTGAGTGAATGGAT
CGAGTCGGGAGGCGGCGTGAACGTGAGCGGCGCGTCTGCGATGACCGCGCTCGTCGCCAA
GGTGAACGCGTGCGTGTCGCACCTCGAGCAGTTCCCGGTGCGTGTGCACGACCTGCCCGC
GCGTCCCGCCACATCCGCACTCAAGTTCTTCAACACTCATCAACTAATGTGTGATCTCAA
ACGTCATCCGACTTGCAACAATTTGAAGCAGTGGAAGGGAGGCGTTGTACGGATTGACCC
CTTAGCATTAGTACAAGCCATCGAGAGGTACTTGGCCCAGCGCGGATACGCTAGCGGCCG
TACGCGCGAGGGCTCCGCGGGCGGCGCACACTCTGACGACGATGCGCCGTCCGACGACGA
TGTCGACGACTCGCTGCACACCCCGCCCCATCACCACCCCGTCGAAGCTGAACATAAATT
GGAGTTCCTGATTGGTGATACAGTGTTGCCATATAATATGACTGTGTACCAGGCTGTGAG
GCAATTTGGAGAACAGATGGATGCTGACACTGACACGGAAACACCACTCTCAAATGCAGG
CATTTGGGTGCAAACGCACACAATTTATTACCGAGCAGTAGAAGGTGGAGAACAGCCTCG
AGTAGACACAACTACATCTAAAAAAGGAAAAGGGCAACCAACAAAACTATCTTCTAGACG
AAAACCAGACCTGTTTTGGAATGAGGGAATAGTACCTAGTCGAGAATCGCCGCTAGTAAT
GATCCTGCGATCTCCGTTGTTAGCGGAGGGGGAAGTAAAGGACGCGTCGTTGCCGGCACT
AGGGTTGTTGCGTGCGCTCCACGCGCTCTCACGGCACTGGCACACGCTGTACCGCGCCGC
CTGTCTGCCCGACCACCGCCCGCTCGTACCCAACCTCGACTTCGTCAATGCTAAGCTCGC
TGCCAAAGCTAATCGGCAGTTGCAGGATCCACTCGTGATAATGACGGGAAATCTTCCAGC
ATGGTTGAAGAAAATTGCTTATGCTTGTCCGTTCGTGCTTCCGTTCGAGTGTCGTCACTT
GCTTTTCTATGTGGTATCATTCGACCGCGACCGAGCGCTCCAGCGGCTACTGGAGGCGGG
CGGCGAGCGCGGCGCCGTCGCTGCGGGCGAAGCGGAACGCGTCGCGCCCCGTCTCGACCG
ACGCAAGCGCACTGTGCAGCGCCACAACGTGCTGCGCCAAGCCGAGCACGTCATGCACGA
GTTTGCACACACCAAAGCGTTGCTCGAGATACAGTACGAGAACGAGGTCGGAACAGGTCT
CGGTCCCACGCTAGAGTTTTATGCCCTAGTCTCCCAGGAGCTGCAGCGCGCTGATCTCGA
CCTCTGGCACGGCAGCGAGAATTTCAAACAGAAGCCGAGCTCGTTCGGCGGTGAAATAGT
AAAATCTCACCCGCCACCGCAAACGGATCGCAGCCCAGACGCGGCGGCCAGACTTGCCTC
TTCAGTTCGCGATACGCTGAATATTGACGAGGATCACGCACGCGCTTCCCTGCCCCCTTC
ACTGCCGGCATCTCAACCCGGGTCTCTCCCCGCTTCACCACCGGCGTCACTTCCGGCTGA
TCTTGATAAAGAAACTTCCGCCCCGTCCCCACCTCCCGACGCTGCCTGCGTCTCTTGGCC
CTGCGGCCTCTTCCCACAAGCTATTGGGCGTAACTCGCGTGCCTCCCACATCTCGCGTGT
CAAGGCCAAGTTCCGTTTCCTTGGCAAGTTTATGGCAAAGGCTGTTATGGATTCGCGTAT
GGTTGATATTCCACTATCGGTCACTATGTACCGTTGGGTGGTGAACGAAGACAGGTGGCT
GAATTTAAGCGATGTGCGACACGTGGCACCGGAGCTGTGGCGTTCTCTATGTCGGCTGCG
TCGTGTGGCTGATCGTGCACAAATGATCGCTGCCGATTCTAGGCATACGACTGATCAAAG
AACACAATTAATAAGCAATCTAGAACTTGACGGGTGTCCGATCGAAGAACTTGGCTTGGA
CTTCATATTACCGGGTGACGGATGCACAGAGTTGCGCCGCGGCGGCCGTGACCTGCCCGT
CACTGCACACAACCTGCACAACTACATTGAACTAGTGACGCATTGGTTACTCTATGAAGG
AGTGACCAAGCAAATGGAAGCATTCAAAGAAGGATTTGAATCAGTATTTCCCCTAACCAA
TCTCAAAATATTCTACCCTGAAGAATTGGAACAAGTCTTTTGCGGAAGTCCATCAGGAGG
GCGTGAGCAACGCTGGGATCCCCGTATGCTTGCGGAGTGCATTCGACCGGATCACGGATA
CAACGCAGAGTCTCGAGCCATTCGCATGCTCATCGATATACTCGCCTCTTATACACGCGA
AGAACAACGCCTGTTCCTACAGTTTGTTACAGGAAGTCCACGTCTACCAACAGGAGGTTT
CAAAGCTCTCAATCCACCGTTGACTGTTGTACGTAAGTCGCTGGAGTCGTTAGATCCAGA
TGAGTATCTACCATCGGTAATGACGTGCGTCAATTACCTGAAGCTGCCAGACTACAGCAG
TTCAGAAGTGATGCGCGCCAAGTTACGCCTCGCCGCTTCTGAGGGGCAACACTCGTTTCA
TCTGTCGTGAATGACTTATAGTTTCTAATCATTTGCGGATAAATTTTATCGACCTTTCAA
TGTTATTTGAGTACATGCGGTATGAATGCGGTTAGTGATATTTATAGTATAAATAGTGCT
ATACCTTAAAGTGCGCACGCTCCGAATGACAGATGTGTTTATGTGCAATCAAAGTGAATT
TATTATACCTATAAATTTATATGTTGGACACTAAAAGTGCTGCTGTTCTGTAATTTTGTT
TATGCTTTGGATTCTTTTTAGATTACATAAATGTGTTTATATTATATTTTGTGTTAATAT
TATATTTTGTGTTAATTTAATGTGATAGCTTTGTATATTACTTTATCTATACACCAGAGA
GACTATTCGGTTCCATTAGATTTATAATAATAATATAATGCAGACAAGAAAACGTCAGCT
GATTAAAGCAGTTTTACTTAGAAATACATTATGCTGCTCCCTCGGCGACTTATTATCTGT
CTTTGCTATAAAAATGCGAATCGATTTTATCCTGTCTGCAAGGTAATCTTCTTAAGTACT
GTGTAGTTTTGTCCCTATTAAATGGACCAGTACATTTACTCCTTATTGGATCACTGGAAT
ACTCTGAGGATCCTATAATTAAAATAGCATTTATTACCAAACGGTGC
(5027 bp)

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