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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_SariASG_c38612_g1_i3
Scaffold_id
NCBI non-redundant
(nr)		PREDICTED:_E3_ubiquitin-protein_ligase_TRIP12_isoform_X1_[Papilio_xuthus]
Ontology
GO:0004842 F ubiquitin-protein transferase activity
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0006281 P DNA repair
GO:0006974 P cellular response to DNA damage stimulus
GO:0008270 F zinc ion binding
GO:0009790 P embryo development
GO:0016567 P protein ubiquitination
GO:0016874 F ligase activity
GO:0042787 P ubiquitin-dependent protein catabolic process
GO:0046966 F thyroid hormone receptor binding
GO:1901315 P negative regulation of histone H2A K63-linked ubiquitination
GO:2000780 P negative regulation of double-strand break repair
Transcript
Level		FPKM:6.19 TPM:6.00
ORF EntryO_SariASG15858_complete:A_SariASG_c38612_g1_i3
Sequence
(Nucleotide)
GCTTGAAATTTTATAAAAATCTGCATGGATCAAAATTATAGTGTCATTTCGTCTCGAAAT
AGTGACAATTAGTGAATGATATGTGGATTTTATTACTGATGTGAAATTTTCTGTAGAGTA
CCATAATAATCGATTTGAAGTTTTGTCAAACATCATTCGCGATAAACGAAATAGCGTTAG
TGATTTATTACGTCTTATATTTGAGGTATCGTTATGTACCGTACATAAATTAGCTACATA
TACTGATTTGTAAAATACGACCCTGCTGAAAGGAACGTTTCATAGATAACTTTGTGGTGT
GTGTCAATTTAGTGCGTACTTTGCAAGTGTAGTGATTGTGATTGTGTCAGTGTGAAACGT
TAAGTTGGGATTCGGGTGGTAATGTTGTAAGATCGTGGAGTTCAAAGTATTGGATGCGGA
GGCTGTGTTGTAGCGCTCGCCCTGGCATGGTGCCGGGCAGGTAGCGCGCGCGGGCGGCCT
GCGCAGGCCCCACACAAGCAGCCGCGTGTGTCCCCCAGCGTCGTCTATGGCCGAGCAACA
CACTACACCGTCGTCACACTCTGCACTCACGAGAGAGTCCAGCGGGTCTTCTCCTAGCAG
GGTGGTGGGCGGTCGGTGCTTGCGTCAAGTGCGTCGAGCGAGCCATAGCCGTCGAAATAA
ACACAACGCGACATCGCCCCTGCCTCGCTCCACAAGCAGGCATTCGTCAACCCTAGTGTC
AGATACTGAGCCACATACTCACATCGAATTGCGTAGAAGTTCACGTCTAATCAACTCTTT
GCCTAGATCCGACTATTCCATCACTGAGCGCTGGTCATACGGAACGGACGTATACGAAAC
CCGTTGTGATACAAGTTTCAAGAGTGGAGATACGTCTAAATCACATTCATTGTATACCTA
CCCGTCAGAGTATAGTAAACAGGAACGTACGTCTTCGCATGAACGTAAAAAACGCAAAGT
TACATCGACTAAAAGCACAGAAGAGTGCGTTGCTTATTGTACACGCTCACGGACTGCTCT
TAAATCCAGTGAGAGTGCTTGTGAGCAAATTTCGAATAGTTTAGTAACACAAACTTTACC
ACAGTTTTCATCGAGTCATAGTGCCACAGCGACTTCGACACAAACGAATCAGCCCGAAAG
CGGCCTACTTCCATTAGACGAAAGAGATTTCGCATATTCTCCATTCAGTTCATCAACTGT
CACAGAGTTACTTGATTCCGATTACTCTGTGTACAGTCCAACAGCTAGCCGTAGAAAGGG
TAAAAAGCGAAAACGATCATCGTATCGTTCATTATCAAGCAGAAAAAATAGTTGTCTGAT
AAATATTGAAGATAATAGAAAAAAGTTTAAAACCGGCTCACATAGTAAAGATATAGAAGA
TACCGGTGAAATATCATTCACCCGGGCTCCTATTAAATACGATACCGAAAGACGCGACCA
ACCGAGTGCAACACACATATTGTGTACATATCGGCTGCGCAACAGAAATCAGCGAGATCT
TGGTCCTCCCACTTCAACAGTCGTCAGAGATACTTCAGCGAGTCCGTCGACTAGCGAGAC
GGCACTTTTCTCACCGCTAGCTGAACGTAAGAGTGCAATCGACTCACACGGGAGAACAGA
AACTCCACCACCGTTTAAGGATATTCAAGAAGCGAGTTCCTCAAAGGGGCATAGCTCAGG
AAGCAAGTTGTTAATAGTACCACGTGATCTTCCATATCTACGGCAGACTAACGCACGGAG
GAGTATCGCTGCTGCAACGGGTGCAACACTGGGTGCTTGCCTGACGAGAGGAGCCGCCAC
TAATCAGCGTCAGAGGCAAGATTCTGCTTCTAAGCGACAGGTGGCAGGCGCGGGCAGCGA
GAGCGCTAGCGGCAGCGCTGCAGGCGGGCGGCGGCCGCGGTCTCGCGACATGCCGCAGCC
GGCATCCACGCGCAAAGATAAACGAGGTAAAACCAGTCTGGGTTCGTGTGCCAGCTCTGG
TGGTGCGTCCAGCCGGTCTCACCCCCAGACTTTAACCACGGGTGCCATTGCATCCACATC
GTCCACGCCGCCGGCATCTGCGTCAGCTGCTACAATGCCTGACAACGGAAACAGCGATGC
CAAGCCGAAAACCAAAGCGTCCTCGTCTGGTGAAGAGTGCGCCGGCGGCGGCGTCGCGGT
TGCCGGCGGTGTGGGCGGCAGCGGGCTCGGAGGCGCGGCCGCAGCGCTCAGCGCGCTGGG
CGCCGCCGCCGAGGAGTCCTCCTCGGAAGAAGGCGAGGTCGGTCGGCTGCAAGCACTGCT
CGAAGCACGCGGGTTGCCACCCCACCTGCTGGGCGCGCTCGGCCCGCGCATGCAACACTT
ACTGCACAGGACCGTCACTGCTAATTCCGCTGCATCGAAAGCAGCTCAGCTGCTTGCTGG
ACTACAAGCTACAGGTGATGAAGGTCAACAGTTACAAGCTGTTATAGAAATGTGCCAACT
GCTAGTGATGGGCAACGAGGATACGTTGGCCGGATTCCCGGTGCGGCAAGTCGTACCTGC
CCTTGTCAATTTGTTGGCTGCAGAACATAATTTCGATATGATGAATCATGCGTGTCGCGC
TCTGACATACATGTTGGAGGCTTTGCCCCGCAGCAGTGGCGCTGTGGCCCTCGCTGTGCC
GGCATTCCTCGACAAACTCCAAGCCATCACGTGTATGGACGTTGCAGAACAGAGTCTCAC
CGCACTCGACATGCTCTCCCGGAGGCATTCGAAGGCTATATTACAGGCGCGAGGAGTATC
CGCATGCCTGACATATTTGGATTTCTTCTCTATAAATGCGCAACGAGCTGCATTATCAAT
CACTGCCAACTGTTGCCAAAATCTCACATCAGATGAGTTTCACCTAGTCCGTGATTCACT
ACAATTATTAGCAAACAGATTAACTCAGCAGGACAAGAAGTCTGTGGAATGCGTGTGCCT
CGCGTTCTCCCGGATGGTCGACAGCTTCCAACATGATCCGGCGCGTTTACAGGAAATAGC
CACGCCCGAACTTCTGACCAATTTACAACAACTTCTGGTCGTCCAGCCACCACTGATATC
CGGAGGTACATTCATCACTGTACTACGATTGTTGTGGGTGATGTGCGCCGCCTGCCCGCA
GTTGGCTCTCGCCTTGCACCAGAGATCCATTGCTGACACTTTGCTGTGTCTGCTGACTGG
CTCCACTCTTCATCAGGAGCAAGTGGAACTTATCCCACGGCCGCCTCAAGAGTTGTATGA
GATAACGTGTCTGATTGGTGAACTGATGCCGAGGCTGCCCACGGACGGGATATTCGCGGT
CGACGCGCATCTCGACAGGCCTTGGTCCGCGCCCACAGAACGGACTGCGCATTGGCAATG
GAGAGACGATAGAGGTGTATGGCGTTCGTACTCGTGGGCGGAGAGCCGAGCGCTCGAGGC
GGGCGTCGCCGCCGGCGAGGAGGAGGTCTGCCTCGCCACGCTGGGCCGCTCGTACACCGT
GGACCTGACCGCCATGCAGCAGCTGAATGACCACACGGGCACCGCGCGCCCCGTGCAGCG
CGTCGCGCCACAGCCCAACCCTTCAGATCAGGGTAACGCTGCTAATGGATCTACACCAGA
TCCACGTATCGCGATGGTGCGGTCGAGCACGTCGCTGGTGCGCGCCCTGCTCGCCGTGCT
GCACGAGGTGTACTGGAGCTCCGCGGGCCCAGCTGTTCGCTCGCAAGCGCTTAAAGCGAT
CCTGCGCTGCGTTTACTACGCTGATGCAACACTCCTACGACAAGTACTCAAGATGCAGGT
GATATCATCACACATAGCGGGTATGATGGCGTCGAGTGACCTGCGCATAGTGGTAGGGTC
GCTGCAGTTGGCGGAGATACTGATGCAGCGACTGCCCGAGGAGATGGCGCTTCAGTTCCG
TCGCGAGGGCGTGCTGCACCAGGTCGCGCAGCTTGCCGAACGCGCCACGCCGCCTAAACA
GAACAAACTCAAGTCACCGAGCGGTGCCACCCTACGCTCGAGCGGCGGAGCGACGCCGCC
CGTCCCCGCCGCCGCCCTCGCCTCCGCCTCCGCCTCCACATCCACCACTTCGATCGAACA
CAATAATTTGTCACTCGCATTTTCCGCATCCGGGTCTTTCGTTACTACTAATATACCGAT
TGGTAGCGATGGTAGTGGTTCTGAATCTGGCCCAGCATCGAACTCGGCACATCCTCAAAT
AGCTACATCAGCTCATAGGTCTAACAGTCCGCTACAGCTGGCGGAAAAACTGAAGCGTAA
GCGCGCAGTCAAGCGATCCGGTGGTGGCGGGAGTCGGCACGCGCGCCGCCGGGACGAGGT
CGCTCACGCGTCATACGCAGCCGTGCCGGCGCCGCAAGCGCACGTGCATCCCGCGCACCA
GCCGCATCCCGCTTACACAGCCCATCCAGCGCATCTCGCCGTCTCACATTCGACGCCGCA
CGGTTCGGGAGTACAGTGCGCGGCTCGATCTACCAGTAGACCGGGAGGGCCGTCCAAGAC
GTCCTCATTCCTCTCCTCACTGAATCCGACGCGCTGGGGGCGAGCGCCTCACGCGCACAA
AGACTCCGCTCTACTCGCCTCCCCGCACACCTCTGCCAATCTCTCTGTGCAGAACAAAGA
GAAGGTGCGCGAGTGGATTGAGTGGCGCGCGGCACGTCTACAACGCGAGTGGGGCGGCGG
CACCGGGTGCGGCGGAGCCCTGGAGGCGCTGGCGGCGCTCGCGCATGCGCTCCCGCACCG
GCATCACCGACGCGCCGCACTCGAGACTCTGCGGGAGACGTTGCTGCATCACGACGTCTC
ACCTTTCGAAGTTAATCACTCTGGAGTGCTGGGCGCCGTGCATCAGTTCCTGACAGGCGG
AGAGTGTGACAAGGAGTCGACCGGTACCCGGGAACCAGATGGTGAAGCATCGTCCGGTGT
CGACGCCTGCGAAGACCGGCTACGGCTTTTCCTTCATGTTTTCGCTGAAATGCCGCTTGG
ACCTGATGTGAGTGAATGGATCGAGTCGGGAGGCGGCGTGAACGTGAGCGGCGCGTCTGC
GATGACCGCGCTCGTCGCCAAGGTGAACGCGTGCGTGTCGCACCTCGAGCAGTTCCCGGT
GCGTGTGCACGACCTGCCCGCGCGTCCCGCCACATCCGCACTCAAGTTCTTCAACACTCA
TCAACTAATGTGTGATCTCAAACGTCATCCGACTTGCAACAATTTGAAGCAGTGGAAGGG
AGGCGTTGTACGGATTGACCCCTTAGCATTAGTACAAGCCATCGAGAGGTACTTGGCCCA
GCGCGGATACGCTAGCGGCCGTACGCGCGAGGGCTCCGCGGGCGGCGCACACTCTGACGA
CGATGCGCCGTCCGACGACGATGTCGACGACTCGCTGCACACCCCGCCCCATCACCACCC
CGTCGAAGCTGAACATAAATTGGAGTTCCTGATTGGTGATACAGTGTTGCCATATAATAT
GACTGTGTACCAGGCTGTGAGGCAATTTGGAGAACAGATGGATGCTGACACTGACACGGA
AACACCACTCTCAAATGCAGGCATTTGGGTGCAAACGCACACAATTTATTACCGAGCAGT
AGAAGGTGGAGAACAGCCTCGAGTAGACACAACTACATCTAAAAAAGGAAAAGGGCAACC
AACAAAACTATCTTCTAGACGAAAACCAGACCTGTTTTGGAATGAGGGAATAGTACCTAG
TCGAGAATCGCCGCTAGTAATGATCCTGCGATCTCCGTTGTTAGCGGAGGGGGAAGTAAA
GGACGCGTCGTTGCCGGCACTAGGGTTGTTGCGTGCGCTCCACGCGCTCTCACGGCACTG
GCACACGCTGTACCGCGCCGCCTGTCTGCCCGACCACCGCCCGCTCGTACCCAACCTCGA
CTTCGTCAATGCTAAGCTCGCTGCCAAAGCTAATCGGCAGTTGCAGGATCCACTCGTGAT
AATGACGGGAAATCTTCCAGCATGGTTGAAGAAAATTGCTTATGCTTGTCCGTTCGTGCT
TCCGTTCGAGTGTCGTCACTTGCTTTTCTATGTGGTATCATTCGACCGCGACCGAGCGCT
CCAGCGGCTACTGGAGGCGGGCGGCGAGCGCGGCGCCGTCGCTGCGGGCGAAGCGGAACG
CGTCGCGCCCCGTCTCGACCGACGCAAGCGCACTGTGCAGCGCCACAACGTGCTGCGCCA
AGCCGAGCACGTCATGCACGAGTTTGCACACACCAAAGCGTTGCTCGAGATACAGTACGA
GAACGAGGTCGGAACAGGTCTCGGTCCCACGCTAGAGTTTTATGCCCTAGTCTCCCAGGA
GCTGCAGCGCGCTGATCTCGACCTCTGGCACGGCAGCGAGAATTTCAAACAGAAGCCGAG
CTCGTTCGGCGGTGAAATAGTAAAATCTCACCCGCCACCGCAAACGGATCGCAGCCCAGA
CGCGGCGGCCAGACTTGCCTCTTCAGTTCGCGATACGCTGAATATTGACGAGGATCACGC
ACGCGCTTCCCTGCCCCCTTCACTGCCGGCATCTCAACCCGGGTCTCTCCCCGCTTCACC
ACCGGCGTCACTTCCGGCTGATCTTGATAAAGAAACTTCCGCCCCGTCCCCACCTCCCGA
CGCTGCCTGCGTCTCTTGGCCCTGCGGCCTCTTCCCACAAGCTATTGGGCGTAACTCGCG
TGCCTCCCACATCTCGCGTGTCAAGGCCAAGTTCCGTTTCCTTGGCAAGTTTATGGCAAA
GGCTGTTATGGATTCGCGTATGGTTGATATTCCACTATCGGTCACTATGTACCGTTGGGT
GGTGAACGAAGACAGGTGGCTGAATTTAAGCGATGTGCGACACGTGGCACCGGAGCTGTG
GCGTTCTCTATGTCGGCTGCGTCGTGTGGCTGATCGTGCACAAATGATCGCTGCCGATTC
TAGGCATACGACTGATCAAAGAACACAATTAATAAGCAATCTAGAACTTGACGGGTGTCC
GATCGAAGAACTTGGCTTGGACTTCATATTACCGGGTGACGGATGCACAGAGTTGCGCCG
CGGCGGCCGTGACCTGCCCGTCACTGCACACAACCTGCACAACTACATTGAACTAGTGAC
GCATTGGTTACTCTATGAAGGAGTGACCAAGCAAATGGAAGCATTCAAAGAAGGATTTGA
ATCAGTATTTCCCCTAACCAATCTCAAAATATTCTACCCTGAAGAATTGGAACAAGTCTT
TTGCGGAAGTCCATCAGGAGGGCGTGAGCAACGCTGGGATCCCCGTATGCTTGCGGAGTG
CATTCGACCGGATCACGGATACAACGCAGAGTCTCGAGCCATTCGCATGCTCATCGATAT
ACTCGCCTCTTATACACGCGAAGAACAACGCCTGTTCCTACAGTTTGTTACAGGAAGTCC
ACGTCTACCAACAGGAGGTTTCAAAGCTCTCAATCCACCGTTGACTGTTGTACGTAAGTC
GCTGGAGTCGTTAGATCCAGATGAGTATCTACCATCGGTAATGACGTGCGTCAATTACCT
GAAGCTGCCAGACTACAGCAGTTCAGAAGTGATGCGCGCCAAGTTACGCCTCGCCGCTTC
TGAGGGGCAACACTCGTTTCATCTGTCGTGAATGACTTATAGTTTCTAATCATTTGCGGA
TAAATTTTATCGACCTTTCAATGTTATTTGAGTACATGCGGTATGAATGCGGTTAGTGAT
ATTTATAGTATAAATAGTGCTATACCTTAAAGTGCGCACGCTCCGAATGACAGATGTGTT
TATGTGCAATCAAAGTGAATTTATTATACCTATAAATTTATATGTTGGACACTAAAAGTG
CTGCTGTTCTGTAATTTTGTTTATGCTTTGGATTCTTTTTAGATTACATAAATGTGTTTA
TATTATATTTTGTGTTAATATTATATTTTGTGTTAATTTAATGTGATAGCTTTGTATATT
ACTTTATCTATACACCAGAGAGACTATTCGGTTCCATTAGATTTATAATAATAATATAAT
GCAGACAAGAAAACGTCAGCTGATTAAAGCAGTTTTACTTAGAAATACATTATGCTGCTC
CCTCGGCGACTTATTATCTGTCTTTGCTATAAAAATGCGAATCGATTTTATCCTGTCTGC
AAGGTAATCTTCTTAAGTACTGTGTAGTTTTGTCCCTATTAAATGGACCAGTACATTTAC
TCCTTATTGGATCACTGGAATACTCTGAGGATCCTATAATTAAAATAGCATTTATTACCA
AACGGTGC
(8228 bp)

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