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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_SariASG_c38612_g1_i2
Scaffold_id
NCBI non-redundant
(nr)		PREDICTED:_E3_ubiquitin-protein_ligase_TRIP12_isoform_X1_[Papilio_xuthus]
Ontology
GO:0004842 F ubiquitin-protein transferase activity
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0006281 P DNA repair
GO:0006974 P cellular response to DNA damage stimulus
GO:0008270 F zinc ion binding
GO:0009790 P embryo development
GO:0016567 P protein ubiquitination
GO:0016874 F ligase activity
GO:0042787 P ubiquitin-dependent protein catabolic process
GO:0046966 F thyroid hormone receptor binding
GO:1901315 P negative regulation of histone H2A K63-linked ubiquitination
GO:2000780 P negative regulation of double-strand break repair
Transcript
Level		FPKM:4.54 TPM:4.40
ORF EntryO_SariASG15853_complete:A_SariASG_c38612_g1_i2
Sequence
(Nucleotide)
GCCAACCAGCTGTGTAGAATGGATTGAAAAATAACTCTGCAAGCGTAGCTGTCCTTGATG
TGTCATCCATTACATTATTTTTTATAAACGTTCTATTTGCATGATTTTAAAACTCATATT
ACACAAAATAATATACATTTATACGGGCCCGTGTTATTACTTATTTGCTTACGGTTTGTG
CCATAAATTGTTGGAATGTTTATGTAATACAGCTTTGTTCAAACGCTGACTATGTATTTC
ATCTTTTGTTCCAGATAACTTTGTGGTGTGTGTCAATTTAGTGCGTACTTTGCAAGTGTA
GTGATTGTGATTGTGTCAGTGTGAAACGTTAAGTTGGGATTCGGGTGGTAATGTTGTAAG
ATCGTGGAGTTCAAAGTATTGGATGCGGAGGCTGTGTTGTAGCGCTCGCCCTGGCATGGT
GCCGGGCAGGTAGCGCGCGCGGGCGGCCTGCGCAGGCCCCACACAAGCAGCCGCGTGTGT
CCCCCAGCGTCGTCTATGGCCGAGCAACACACTACACCGTCGTCACACTCTGCACTCACG
AGAGAGTCCAGCGGGTCTTCTCCTAGCAGGGTGGTGGGCGGTCGGTGCTTGCGTCAAGTG
CGTCGAGCGAGCCATAGCCGTCGAAATAAACACAACGCGACATCGCCCCTGCCTCGCTCC
ACAAGCAGGCATTCGTCAACCCTAGTGTCAGATACTGAGCCACATACTCACATCGAATTG
CGTAGAAGTTCACGTCTAATCAACTCTTTGCCTAGATCCGACTATTCCATCACTGAGCGC
TGGTCATACGGAACGGACGTATACGAAACCCGTTGTGATACAAGTTTCAAGAGTGGAGAT
ACGTCTAAATCACATTCATTGTATACCTACCCGTCAGAGTATAGTAAACAGGAACGTACG
TCTTCGCATGAACGTAAAAAACGCAAAGTTACATCGACTAAAAGCACAGAAGAGTGCGTT
GCTTATTGTACACGCTCACGGACTGCTCTTAAATCCAGTGAGAGTGCTTGTGAGCAAATT
TCGAATAGTTTAGTAACACAAACTTTACCACAGTTTTCATCGAGTCATAGTGCCACAGCG
ACTTCGACACAAACGAATCAGCCCGAAAGCGGCCTACTTCCATTAGACGAAAGAGATTTC
GCATATTCTCCATTCAGTTCATCAACTGTCACAGAGTTACTTGATTCCGATTACTCTGTG
TACAGTCCAACAGCTAGCCGTAGAAAGGGTAAAAAGCGAAAACGATCATCGTATCGTTCA
TTATCAAGCAGAAAAAATAGTTGTCTGATAAATATTGAAGATAATAGAAAAAAGTTTAAA
ACCGGCTCACATAGTAAAGATATAGAAGATACCGGTGAAATATCATTCACCCGGGCTCCT
ATTAAATACGATACCGAAAGACGCGACCAACCGAGTGCAACACACATATTGTGTACATAT
CGGCTGCGCAACAGAAATCAGCGAGATCTTGGTCCTCCCACTTCAACAGTCGTCAGAGAT
ACTTCAGCGAGTCCGTCGACTAGCGAGACGGCACTTTTCTCACCGCTAGCTGAACGTAAG
AGTGCAATCGACTCACACGGGAGAACAGAAACTCCACCACCGTTTAAGGATATTCAAGAA
GCGAGTTCCTCAAAGGGGCATAGCTCAGGAAGCAAGTTGTTAATAGTACCACGTGATCTT
CCATATCTACGGCAGACTAACGCACGGAGGAGTATCGCTGCTGCAACGGGTGCAACACTG
GGTGCTTGCCTGACGAGAGGAGCCGCCACTAATCAGCGTCAGAGGCAAGATTCTGCTTCT
AAGCGACAGGTGGCAGGCGCGGGCAGCGAGAGCGCTAGCGGCAGCGCTGCAGGCGGGCGG
CGGCCGCGGTCTCGCGACATGCCGCAGCCGGCATCCACGCGCAAAGATAAACGAGGTAAA
ACCAGTCTGGGTTCGTGTGCCAGCTCTGGTGGTGCGTCCAGCCGGTCTCACCCCCAGACT
TTAACCACGGGTGCCATTGCATCCACATCGTCCACGCCGCCGGCATCTGCGTCAGCTGCT
ACAATGCCTGACAACGGAAACAGCGATGCCAAGCCGAAAACCAAAGCGTCCTCGTCTGGT
GAAGAGTGCGCCGGCGGCGGCGTCGCGGTTGCCGGCGGTGTGGGCGGCAGCGGGCTCGGA
GGCGCGGCCGCAGCGCTCAGCGCGCTGGGCGCCGCCGCCGAGGAGTCCTCCTCGGAAGAA
GGCGAGGTCGGTCGGCTGCAAGCACTGCTCGAAGCACGCGGGTTGCCACCCCACCTGCTG
GGCGCGCTCGGCCCGCGCATGCAACACTTACTGCACAGGACCGTCACTGCTAATTCCGCT
GCATCGAAAGCAGCTCAGCTGCTTGCTGGACTACAAGCTACAGGTGATGAAGGTCAACAG
TTACAAGCTGTTATAGAAATGTGCCAACTGCTAGTGATGGGCAACGAGGATACGTTGGCC
GGATTCCCGGTGCGGCAAGTCGTACCTGCCCTTGTCAATTTGTTGGCTGCAGAACATAAT
TTCGATATGATGAATCATGCGTGTCGCGCTCTGACATACATGTTGGAGGCTTTGCCCCGC
AGCAGTGGCGCTGTGGCCCTCGCTGTGCCGGCATTCCTCGACAAACTCCAAGCCATCACG
TGTATGGACGTTGCAGAACAGAGTCTCACCGCACTCGACATGCTCTCCCGGAGGCATTCG
AAGGCTATATTACAGGCGCGAGGAGTATCCGCATGCCTGACATATTTGGATTTCTTCTCT
ATAAATGCGCAACGAGCTGCATTATCAATCACTGCCAACTGTTGCCAAAATCTCACATCA
GATGAGTTTCACCTAGTCCGTGATTCACTACAATTATTAGCAAACAGATTAACTCAGCAG
GACAAGAAGTCTGTGGAATGCGTGTGCCTCGCGTTCTCCCGGATGGTCGACAGCTTCCAA
CATGATCCGGCGCGTTTACAGGAAATAGCCACGCCCGAACTTCTGACCAATTTACAACAA
CTTCTGGTCGTCCAGCCACCACTGATATCCGGAGGTACATTCATCACTGTACTACGATTG
TTGTGGGTGATGTGCGCCGCCTGCCCGCAGTTGGCTCTCGCCTTGCACCAGAGATCCATT
GCTGACACTTTGCTGTGTCTGCTGACTGGCTCCACTCTTCATCAGGAGCAAGTGGAACTT
ATCCCACGGCCGCCTCAAGAGTTGTATGAGATAACGTGTCTGATTGGTGAACTGATGCCG
AGGCTGCCCACGGACGGGATATTCGCGGTCGACGCGCATCTCGACAGGCCTTGGTCCGCG
CCCACAGAACGGACTGCGCATTGGCAATGGAGAGACGATAGAGGTGTATGGCGTTCGTAC
TCGTGGGCGGAGAGCCGAGCGCTCGAGGCGGGCGTCGCCGCCGGCGAGGAGGAGGTCTGC
CTCGCCACGCTGGGCCGCTCGTACACCGTGGACCTGACCGCCATGCAGCAGCTGAATGAC
CACACGGGCACCGCGCGCCCCGTGCAGCGCGTCGCGCCACAGCCCAACCCTTCAGATCAG
GGTAACGCTGCTAATGGATCTACACCAGATCCACGTATCGCGATGGTGCGGTCGAGCACG
TCGCTGGTGCGCGCCCTGCTCGCCGTGCTGCACGAGGTGTACTGGAGCTCCGCGGGCCCA
GCTGTTCGCTCGCAAGCGCTTAAAGCGATCCTGCGCTGCGTTTACTACGCTGATGCAACA
CTCCTACGACAAGTACTCAAGATGCAGGTGATATCATCACACATAGCGGGTATGATGGCG
TCGAGTGACCTGCGCATAGTGGTAGGGTCGCTGCAGTTGGCGGAGATACTGATGCAGCGA
CTGCCCGAGGAGATGGCGCTTCAGTTCCGTCGCGAGGGCGTGCTGCACCAGGTCGCGCAG
CTTGCCGAACGCGCCACGCCGCCTAAACAGAACAAACTCAAGTCACCGAGCGGTGCCACC
CTACGCTCGAGCGGCGGAGCGACGCCGCCCGTCCCCGCCGCCGCCCTCGCCTCCGCCTCC
GCCTCCACATCCACCACTTCGATCGAACACAATAATTTGTCACTCGCATTTTCCGCATCC
GGGTCTTTCGTTACTACTAATATACCGATTGGTAGCGATGGTAGTGGTTCTGAATCTGGC
CCAGCATCGAACTCGGCACATCCTCAAATAGCTACATCAGCTCATAGGTCTAACAGTCCG
CTACAGCTGGCGGAAAAACTGAAGCGTAAGCGCGCAGTCAAGCGATCCGGTGGTGGCGGG
AGTCGGCACGCGCGCCGCCGGGACGAGGTCGCTCACGCGTCATACGCAGCCGTGCCGGCG
CCGCAAGCGCACGTGCATCCCGCGCACCAGCCGCATCCCGCTTACACAGCCCATCCAGCG
CATCTCGCCGTCTCACATTCGACGCCGCACGGTTCGGGAGTACAGTGCGCGGCTCGATCT
ACCAGTAGACCGGGAGGGCCGTCCAAGACGTCCTCATTCCTCTCCTCACTGAATCCGACG
CGCTGGGGGCGAGCGCCTCACGCGCACAAAGACTCCGCTCTACTCGCCTCCCCGCACACC
TCTGCCAATCTCTCTGTGCAGAACAAAGAGAAGGTGCGCGAGTGGATTGAGTGGCGCGCG
GCACGTCTACAACGCGAGTGGGGCGGCGGCACCGGGTGCGGCGGAGCCCTGGAGGCGCTG
GCGGCGCTCGCGCATGCGCTCCCGCACCGGCATCACCGACGCGCCGCACTCGAGACTCTG
CGGGAGACGTTGCTGCATCACGACGTCTCACCTTTCGAAGTTAATCACTCTGGAGTGCTG
GGCGCCGTGCATCAGTTCCTGACAGGCGGAGAGTGTGACAAGGAGTCGACCGGTACCCGG
GAACCAGATGGTGAAGCATCGTCCGGTGTCGACGCCTGCGAAGACCGGCTACGGCTTTTC
CTTCATGTTTTCGCTGAAATGCCGCTTGGACCTGATGTGAGTGAATGGATCGAGTCGGGA
GGCGGCGTGAACGTGAGCGGCGCGTCTGCGATGACCGCGCTCGTCGCCAAGGTGAACGCG
TGCGTGTCGCACCTCGAGCAGTTCCCGGTGCGTGTGCACGACCTGCCCGCGCGTCCCGCC
ACATCCGCACTCAAGTTCTTCAACACTCATCAACTAATGTGTGATCTCAAACGTCATCCG
ACTTGCAACAATTTGAAGCAGTGGAAGGGAGGCGTTGTACGGATTGACCCCTTAGCATTA
GTACAAGCCATCGAGAGGTACTTGGCCCAGCGCGGATACGCTAGCGGCCGTACGCGCGAG
GGCTCCGCGGGCGGCGCACACTCTGACGACGATGCGCCGTCCGACGACGATGTCGACGAC
TCGCTGCACACCCCGCCCCATCACCACCCCGTCGAAGCTGAACATAAATTGGAGTTCCTG
ATTGGTGATACAGTGTTGCCATATAATATGACTGTGTACCAGGCTGTGAGGCAATTTGGA
GAACAGATGGATGCTGACACTGACACGGAAACACCACTCTCAAATGCAGGCATTTGGGTG
CAAACGCACACAATTTATTACCGAGCAGTAGAAGGTGGAGAACAGCCTCGAGTAGACACA
ACTACATCTAAAAAAGGAAAAGGGCAACCAACAAAACTATCTTCTAGACGAAAACCAGAC
CTGTTTTGGAATGAGGGAATAGTACCTAGTCGAGAATCGCCGCTAGTAATGATCCTGCGA
TCTCCGTTGTTAGCGGAGGGGGAAGTAAAGGACGCGTCGTTGCCGGCACTAGGGTTGTTG
CGTGCGCTCCACGCGCTCTCACGGCACTGGCACACGCTGTACCGCGCCGCCTGTCTGCCC
GACCACCGCCCGCTCGTACCCAACCTCGACTTCGTCAATGCTAAGCTCGCTGCCAAAGCT
AATCGGCAGTTGCAGGATCCACTCGTGATAATGACGGGAAATCTTCCAGCATGGTTGAAG
AAAATTGCTTATGCTTGTCCGTTCGTGCTTCCGTTCGAGTGTCGTCACTTGCTTTTCTAT
GTGGTATCATTCGACCGCGACCGAGCGCTCCAGCGGCTACTGGAGGCGGGCGGCGAGCGC
GGCGCCGTCGCTGCGGGCGAAGCGGAACGCGTCGCGCCCCGTCTCGACCGACGCAAGCGC
ACTGTGCAGCGCCACAACGTGCTGCGCCAAGCCGAGCACGTCATGCACGAGTTTGCACAC
ACCAAAGCGTTGCTCGAGATACAGTACGAGAACGAGGTCGGAACAGGTCTCGGTCCCACG
CTAGAGTTTTATGCCCTAGTCTCCCAGGAGCTGCAGCGCGCTGATCTCGACCTCTGGCAC
GGCAGCGAGAATTTCAAACAGAAGCCGAGCTCGTTCGGCGGTGAAATAGTAAAATCTCAC
CCGCCACCGCAAACGGATCGCAGCCCAGACGCGGCGGCCAGACTTGCCTCTTCAGTTCGC
GATACGCTGAATATTGACGAGGATCACGCACGCGCTTCCCTGCCCCCTTCACTGCCGGCA
TCTCAACCCGGGTCTCTCCCCGCTTCACCACCGGCGTCACTTCCGGCTGATCTTGATAAA
GAAACTTCCGCCCCGTCCCCACCTCCCGACGCTGCCTGCGTCTCTTGGCCCTGCGGCCTC
TTCCCACAAGCTATTGGGCGTAACTCGCGTGCCTCCCACATCTCGCGTGTCAAGGCCAAG
TTCCGTTTCCTTGGCAAGTTTATGGCAAAGGCTGTTATGGATTCGCGTATGGTTGATATT
CCACTATCGGTCACTATGTACCGTTGGGTGGTGAACGAAGACAGGTGGCTGAATTTAAGC
GATGTGCGACACGTGGCACCGGAGCTGTGGCGTTCTCTATGTCGGCTGCGTCGTGTGGCT
GATCGTGCACAAATGATCGCTGCCGATTCTAGGCATACGACTGATCAAAGAACACAATTA
ATAAGCAATCTAGAACTTGACGGGTGTCCGATCGAAGAACTTGGCTTGGACTTCATATTA
CCGGGTGACGGATGCACAGAGTTGCGCCGCGGCGGCCGTGACCTGCCCGTCACTGCACAC
AACCTGCACAACTACATTGAACTAGTGACGCATTGGTTACTCTATGAAGGAGTGACCAAG
CAAATGGAAGCATTCAAAGAAGGATTTGAATCAGTATTTCCCCTAACCAATCTCAAAATA
TTCTACCCTGAAGAATTGGAACAAGTCTTTTGCGGAAGTCCATCAGGAGGGCGTGAGCAA
CGCTGGGATCCCCGTATGCTTGCGGAGTGCATTCGACCGGATCACGGATACAACGCAGAG
TCTCGAGCCATTCGCATGCTCATCGATATACTCGCCTCTTATACACGCGAAGAACAACGC
CTGTTCCTACAGTTTGTTACAGGAAGTCCACGTCTACCAACAGGAGGTTTCAAAGCTCTC
AATCCACCGTTGACTGTTGTACGTAAGTCGCTGGAGTCGTTAGATCCAGATGAGTATCTA
CCATCGGTAATGACGTGCGTCAATTACCTGAAGCTGCCAGACTACAGCAGTTCAGAAGTG
ATGCGCGCCAAGTTACGCCTCGCCGCTTCTGAGGGGCAACACTCGTTTCATCTGTCGTGA
ATGACTTATAGTTTCTAATCATTTGCGGATAAATTTTATCGACCTTTCAATGTTATTTGA
GTACATGCGGTATGAATGCGGTTAGTGATATTTATAGTATAAATAGTGCTATACCTTAAA
GTGCGCACGCTCCGAATGACAGATGTGTTTATGTGCAATCAAAGTGAATTTATTATACCT
ATAAATTTATATGTTGGACACTAAAAGTGCTGCTGTTCTGTAATTTTGTTTATGCTTTGG
ATTCTTTTTAGATTACATAAATGTGTTTATATTATATTTTGTGTTAATATTATATTTTGT
GTTAATTTAATGTGATAGCTTTGTATATTACTTTATCTATACACCAGAGAGACTATTCGG
TTCCATTAGATTTATAATAATAATATAATGCAGACAAGAAAACGTCAGCTGATTAAAGCA
GTTTTACTTAGAAATACATTATGCTGCTCCCTCGGCGACTTATTATCTGTCTTTGCTATA
AAAATGCGAATCGATTTTATCCTGTCTGCAAGGTAATCTTCTTAAGTACTGTGTAGTTTT
GTCCCTATTAAATGGACCAGTACATTTACTCCTTATTGGATCACTGGAATACTCTGAGGA
TCCTATAATTAAAATAGCATTTATTACCAAACGGTGC
(8197 bp)

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