SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_SariASG_c37901_g1_i2
Scaffold_id
NCBI non-redundant
(nr)		CCR4-NOT_transcription_complex_subunit_1_isoform_X2_[Helicoverpa_armigera]
Ontology
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0000288 P nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay
GO:0000932 C P-body
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006417 P regulation of translation
GO:0010606 P positive regulation of cytoplasmic mRNA processing body assembly
GO:0017148 P negative regulation of translation
GO:0030014 C CCR4-NOT complex
GO:0030015 C CCR4-NOT core complex
GO:0030331 F estrogen receptor binding
GO:0031047 P gene silencing by RNA
GO:0032947 F molecular adaptor activity
GO:0033147 P negative regulation of intracellular estrogen receptor signaling pathway
GO:0042974 F retinoic acid receptor binding
GO:0048387 P negative regulation of retinoic acid receptor signaling pathway
GO:0060213 P positive regulation of nuclear-transcribed mRNA poly(A) tail shortening
GO:1900153 P positive regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay
Transcript
Level		FPKM:37.30 TPM:36.12
ORF EntryO_SariASG14377_complete:A_SariASG_c37901_g1_i2
Sequence
(Nucleotide)
GAGTAAGTCTGTGATCTGTTCATATTTTGCTTGATTTTATACGAATTGTGGACTTACCTT
TGTTATAAACTTTTTAATAACATGTGCTGATTTCTAACGCTCATCACACACAAAATCATA
TCGTTGTAAATGTGATCGCGAAAATCTATTGAGAGTGCTAAATGTAGCTCTAGAAAACAA
TAGTATTGGTGATGTTGAGCTTAGGTTGTAAGCGAACACCCGCTTATAATAGTCTTCCAT
CAAAAATCGAGAATGCTCTAAACGTGTTAAGCTATGAACCTAGACCCTTTAACGTTGAAC
TTATCACAAATCAATTATCTCGTCGTAAATTTAAGTAAGAAAAACTTCACGCAGACGTGT
CAAGAGTTATCTCAGCTTGTTGCACTGTACGGGTTGGAAGCTGAAAAGCAACTGTTAAGG
TGCTTGCTAAATGAAGCTGTTAAAACTATTTGGGACAGCGAGCATCCAAACTCATCCATA
AATAACAGCATTCATGCATCTTTGCTAAGCCAGCACCTGACATCACTACTGAATCATCCA
GCAAAATCTACTGTTGTTTGTGAGACTATTGATCTGCCTTCTTGTGCTATCCAGAAGATA
CTGAAACCGACAAATACCTTTTTCAATCGCCTTTCAAGATTATTAAAGTTAACCACCGCG
GAGGATGTAGCTCTCTCTCTGATTCTAAGGAAGAATTCAAAGAATACTGAAATTGTTGGA
CTCTCTAAGCAACATTTGAAGAAAAGATTTTTGGATTTAGTGCAATGTTATTTAGATGCA
GAACGGAGTCATCAGGCGGAGCACGCTGGGCTTCAGGAATGTAGTACTGAAGTTTTGCAG
ACGCTTCTTTCCAATCTTGTTCATGAAAATTTTCAGTTAGCAGCAGTGACAAAGGACTTA
TTTTTAAAACGGTTACGTACTGATTTTCCCCGCGAAGTAGTACCCCTAGTGTTAGCGCCT
TTATTGTACCCGGACGATACACAAACTCCTCTAGTTGAGATGAGCACAGCTGACGACATG
GCTGCAGCGATGACGGATAACACTCTATCGAAGGTTATATGTGACATCGGATACCTTTTC
ACAAGATCCGTCGATGAATGCAAAAGCACTCTGATAAACTTCGGAACCGGAGAACCAAGT
GCGATAGATGTTGCTCTATTAATATCTATGATGGTGCGTTATCATAAATCTGCACAGGAA
GGCCTCCAGGAAGAGATCCAGACACCGGGAAACTTCTGGATAAGCCACGACTCCAAGAAA
GAACTTGTAACACACGGGCTTAACGAATGGAACGCGGAAGTTTTTGTACTGTCCCTCAAG
GATTTAGCGTCAAATTTGAATTGGAAGGAAGTCATTCTTCAGCTTGACAACTCAGAATTT
TTTGTCCCAGACAGATCTGGATTGAATTTACTTTTCACTATTTTGAGATTAGGCTTACAA
AGCGCTGGTTATCCTGCTAATCTGTTTCCAGTCGAGTATCTTTGTCGGAAATGGACAAAT
TTGGAGGGTCAAATGAGTCTTATCAGCAATATACTCAAGTTTCCGGATATATTCAGCTTT
GCCGACCATCCGTTTCATCCTATTTCAATAGACATATTGAAATCACCCCCTGAAACAGAC
AATAAAGAGGTAGGGACGTGGCGATGTCTTTATTTAGTTGAACTACTGCTGTATGCAGCG
GAACGGGGATACTACCAGCAAGTCCATGATCTGTTTAAGATGCCTCTTCAATTTTGCCCT
GATGTGTTGTTGCTTTCTTTATTACAAATCAATCCACCAGTCACAGTTTTTAGGCAAGAA
TTATTAACAACGCTCATATCAATATTTTTGGGAAACCATCCAAACTCTGGTATAATTCTT
CATCATGCCTGGCACACTCAGAGCCCTAACATGAAACCTATCATAATGCATGCTATGACA
GATTGGTATATTCGAGGTGAATGTGATCAGTCTAAGTTATCAAGAATTCTGGATGTCGCT
CAGGATTTGAAAGCTTTGTCGCTCCTATTGAATGTTCAATCGTTTCCATTCGTTATAGAC
CTAGCCTGTCTAGCCTCCAGGAGAGAATACTTAAAACTGGATAAATGGTTAACTGACAAA
ATCAGAGACCATGGCGAGACATTTGTATCGGCTATGGTGAAGTTTTTGCAACGGCGATGC
CCCCAAGTGCTCGGAAGAATCTCCGATGAACAATTACCGAAAGCTGCACAATTGCCACCG
GACACAATAACCACTATGCTAGCTTGCCTGCAGCTATGTAGTCCAAATGTCCAACAACCG
TTACAAGATGCTATATACAATGTCATTGCTAATTGCCAAACGGTAATTTTAAGTAAAACG
AGACAAAATATCGCTGGAATTGCGAGACCTCATACCAGAGTATTAGAAACTCCATTCAAT
CCAGCTGAATTAAATGGGCAGCTATTTACTTCACATGTAGATTCTATTAATAATCTAACA
CAAAATGTAGCAAACATGACTTTAGGTGGTCCTACAAACACCACATTCGCTATGCGTGGA
ACGTTAGGTCCGTTAGTTACCGCGCCAGGTTCTCCAGTTCATTTGATGGGAGCTGGGGCC
AGCAGTCCATTTTCTATGATGCCTATACCACATACAGTCAATGTAGCTAACATAGGAGCA
CTGGCAAAGGCGACACCTGCACCCATGCTTGATAACCCACGGATGCCTGATCCGATACAA
AACCCGGAAATAATGCATAGCGTAGCGAAAGACATTGAAGAGGAAGCCAATGGGTACTTT
CAAAGAATATACAACCATCCCCCGCATCCTACATTATCGATTGATGAAGTACTCGATATG
TTGAAAAAGTTACAGAATTCTCAAAATAAGAGGGAACAAAATGTGTTCTCTTGTATGCTT
AAAAATCTCTTTGAGGAATACAAGTTCTTTTCTCAGTATCCTGCTAAAGAGTTGCACATA
ACAGCGCAATTATTTGGTGGTATCATTGAGAGAGGACTTGTACCGAGCTACATTTCTCTT
GGACTAGCGTTACGATTCGTTCTTGATGCTTTAAGAAAACCGAAGGGTTCGAAGATGTAC
TACTTTGGAATAACAGCATTGGATAGGTTTAAATCCCGTCTAAAGGATTATCATACGTAT
TGCGAACACGTGAGAGCGATACCGCATTTTAATGAATTCCCTCCACATTTAATTGAGTAT
GTCGAATATGGTTTACAAAGTATAGAACCACCTACAAAACCGCAGGGGCCTGTAATCCCT
GCGAGCTTGGCCGCGATATTGAACCAGAATACTGTGGTAACAGTTACTACATCGTACCAG
GCAATGGCATGTTCGCCTTCGATCACTGTTGTATCAAAGAACTATCCGCTGGGGGGTCTA
GGAAGCCGACCGTCGATCGCCAACGCTACCAACATTGATACTTTACTGATGGCAACTGAT
TGTGAGGAAAAGATCGGCGCTCCTCCAGAACATATACAAGACAAAACAGCATTCATTTTT
AATAACTTAAGCCAGCTGAATTTGCAAACTAAATGTGAAGAACTCAAAGAAATCCTAACT
GAGGAATATCACCCATGGATATCTCAATACCTGGTTATGAAAAGAGCTTCGATTGAGTTT
AACTTTCACGGTCTTTATTCGGATTTCCTTGATGTCCTTAAAATTCGAGAGGTAAATAAG
TTGGTGATCAAGGAGACATACCGCAATATCCGAGTGCTACTGCGTTCCGACAAAGGAATC
GGCAATTTCTCAGACAGATCTCTATTAAAGAATCTCGGTCATTGGTTAGGCATGTTGACA
TTGTTTAGAAATCGGCCCATACTTTTAATAGATCTAGATTTAAAAGCACTTCTATTAGAA
GCCTATCACAAGGGACAACAGGAACTGCTTTACGTTGTCCCCTTTGTTGCTAAAGTGCTT
GAATCATGCGCTAAAAGCGTCGTATTCAAGCCACCGAATCCATGGACTATGGCTTTGATG
AATGTGCTAGCAGAGCTTCACCAGGAACCAGATCTGAAGTTGAACTTAAAGTTTGAAGTT
GAAGTGCTTTGCAAGAACTTAGGTTTGGATATAACAAACTTGAAACCAAGTTTGTATTTA
AAGGACCCGGAGAAAGCGAAACAGATTGAATTCCAATTGTCACAACTAAAGTCAAATAAG
GAGGGAATGCACTCAATCTCTACTAATCAGGCATTAGTGCAACCACCACAAATGCAAATG
GTACAACCACCAGCACAACCTCCACCGCCATTGCTAGCCCCCGAAGACATGGCAGCAGGG
GCATCAGGAGGCCTTATTACAGAAGATCTGATAGAAATGATTGAAACACCAGAACCGAAA
TTCAATTATATTGATGTGAACGTGTCATCGCCATCCGCCTTCGGGCACAAAATATTCTTC
AGCCGTGACATATTGCTGTTCCAGAACTACCCTCATCTAAAACAGTTCGTGAAGCCAGCA
ATAGAGCGATCAATCCAAGAATGGGTACACCCAGTAGTGGACAGGGCTATAAAATATGCA
TTGACGACATGCGAGCAGATCATTCGGAAGGACTTCGCTCTGGACCCGGATGAAGTGCGC
ATGCGCACGTGCGCACACCACATGATGCGGAACCTGACGGCTGGTATGGCCATGATAACC
TGCCGCGGGCAAATTATTACTACTATCGGAACCAACTTAAAAGCGGCATTTATCACCGCC
ATCATGCCTTCTACTCAGCAACAGAAGGAGGTAATTGAGAATGCGGCCGCATTACTCGCT
ACGGATAACATGGAACTGGCGTGTACCTTCATACAGAAGACGGCCGTCGAGAAAGCACTA
CCGGAGTTGGATAAACGTCTCATCAGCGACTACGATAACAGGAAAATCGCTCGCCAGGAG
GGTCGCCGATACTTCGATCCGATCGTGTTAACTTACCAAGCAGAGTTACCGGAGAAAGTG
AGGACTCGCGTCGGCGCACCATCGGAGATGCAGATCGCGGTCTATGATGAGTTCGCGTGC
AACATACCCGGCTTCCTGCCGACCAGGGATACGGGAATGTTCATACCGAAACCTTCGGCC
CAGGAGCAGATGGCTCACTTGGCGTTCAATCAGATGGTAAACCCAGCGCAGGTGTACGTG
GCGGATGAAATGGCTGCATTGATAACGGCCGCTGAGGTGTTCCTGACCAATTCGATTGCG
CACTCGACGCTCGCAGTACAGACGGCGCATATGCATTCTCTCCTCGAGTGCCTTGTCATA
GCACGAAGGAATCGTGATATCGTCTCCGGGTGCACATTACTGCAAAAGGCTGTTGAAGGT
CTCATCGACGGTTTAGTGTTCCAACCGGGAGCGAGCAGCGAACACGTGGAAATGGTGACC
CGTTACAGGGATATCCATATTCGTGTACTGAAACTCCTCGAAGACGCCAAGGTGTACGGT
CACGCTTGGACAACGAAGCAGATAACCAACTGCCTCACTGAATGCAGGGAGGAGCTCCGC
TACAACATTGAAGCAGTTGACTGCCTTATCAGGAATCATCTCGTTAATCTGCCCCAGTAC
GACATCACACTCGCACAATTGATGGACAACGGCAACAACTACATGGCGGTCGCGTTCGCT
ATGCAACTCGTCCAGTTATATCTAGTCGACGACAGAAACAATATGTACGTGAACGAATCC
GAGCTGTACAACACTAGCGAGACGCTCGTCTGGATCGCGTCGCACTCGCGCCAGCCGCCG
GAGGGGCTCGGTACCCTCATAGAGGTGCTAAGAGTCAACCAGGACCCGAGCGCTTATCTG
GGCGAACACACTCCCATGGGACCGACGGCGCACATTCACGCGGCCATATTACAGATTCGG
GCCAAGAACTATGATGACCCGCCCGGCCTCCAAGAGAGGACAGAGAAACTCCTACGCGAG
TGGAGGAACATTCACATGAGTCCCCTCTCTAACATCGAAATAGGGCAGAACTTCAACTTG
TACATGCACCGTATGAATATGAACGGCGTCCTGAAATCCGACGAGATGGTGACGAGATTC
TTCAGAATCGCCGTACAAATGTGTATCGAACACGTGTACCAGTTGTTACAAGAGGAGAAG
GCGAATCCACCAGCGGCGCCTCCGAAACGAGAACTCTACTATACGATGTGTGATTCCTTT
ATCAAGTTCGTTTCGCTGCTGATCAAGAACACGGGCGATAGTGGAAATCCTACGCCCAAA
CTGAACCTGTTGAACAAAGTTCTGGGTATCATCGCCGGTTGCTTACTTCAGGATCATGAG
GAGCGTAACACAAACTTCCATCAGTTACCGTATCACCGTCTGCTGTTTATCCTCTTCCTA
GACATGAACATGGCGGATCCCGTTTTAGAAGCTATCAATTACCAAGTGTTAACATCGTTT
TGTCATACATTGAGAATCATAAGACCGAGCGTCGCTCCTGGTTTCACTTATGCTTGGCTC
GAATTGGTTGCGCACCGTACTTTCATTAATCGTGTACTGGCTGCCACACCGCAACAAAAG
GGCTGGGGCATGTATTCCACATTACTGGTCGATCTGTTCAAATATCTCGAGCCATTCTTA
CGCAATACGAAACTGGAGCCGCCGGTGATGACACTGTACAGGGGCACTCTCAGGGTCCTG
CTCGTGTTGCTGCATGACTTCCCGGAGTTCCTCTGCGACCACCACTACGGGTTCTGCGAC
GAGATACCACCGAACTGCGTGCAGATGCGGAACCTGATACTGTCCGCATTCCCGCGGAAC
ATGCGCCTGCCGGACCCGTTCACGCCCAACCTGAAGGTGGACTTGCTGCCGGAGATCACT
CTGCCGCCGCAAACGGCTGTCAACTACACGACTATTATACCGGGGTCACAGTTCAAGAAG
GATCTAGACGCTTACCTCAAAGTGCGTGCACCGGTCACCTTCTTATCGGAGCTGAGGGGT
CATATGCAGGTCCTAAACGAACCCGGTCGCCGCTACAACAGCCAGCTGATAAATGCTGTA
GTGCTGTACGTAGGCACTCAGGCGATCGCACACATCCGCGCTAAAGGCCAAACGACAAAC
ATGTCGACTATAGCGCATTCAGCACATATGGATATCTTCCAGAACTTTACAGTCGATTTC
GATTTCGAAGGACGGTATTTGTTCCTGAACGCAATCGGGAACCAGCTGCGTTACCCGAAC
AGCCACACGCATTACTTTTCGTGCTGCCTCCTGTACTTGTTCGCCGAAGCGAACTTGGAA
GCTGTCCAGGAACAAATCACCAGGATGTTGCTCGAGAGACTCATTGTCAACAGACCGCAT
CCGTGGGGTCTGCTCATTACATTCATTGAACTGATCAAGAACCCCGTATACAAGTTCTGG
TCACACGAGTTCGTTCATTGTGCACCAGAAATTGAAAAATTAGTGTCTTCTTATTAATTA
TTATATAGTGTTATTATTACCTACTTACTGATTATATAAAAAAAAAA
(7427 bp)

- SilkBase 1999-2023 -