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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_SariASG_c37901_g1_i1
Scaffold_id
NCBI non-redundant
(nr)		CCR4-NOT_transcription_complex_subunit_1_isoform_X2_[Helicoverpa_armigera]
Ontology
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0000288 P nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay
GO:0000932 C P-body
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006417 P regulation of translation
GO:0010606 P positive regulation of cytoplasmic mRNA processing body assembly
GO:0017148 P negative regulation of translation
GO:0030014 C CCR4-NOT complex
GO:0030015 C CCR4-NOT core complex
GO:0030331 F estrogen receptor binding
GO:0031047 P gene silencing by RNA
GO:0032947 F molecular adaptor activity
GO:0033147 P negative regulation of intracellular estrogen receptor signaling pathway
GO:0042974 F retinoic acid receptor binding
GO:0048387 P negative regulation of retinoic acid receptor signaling pathway
GO:0060213 P positive regulation of nuclear-transcribed mRNA poly(A) tail shortening
GO:1900153 P positive regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay
Transcript
Level		FPKM:19.19 TPM:18.58
ORF EntryO_SariASG14376_complete:A_SariASG_c37901_g1_i1
Sequence
(Nucleotide)
GAGTAAGTCTGTGATCTGTTCATATTTTGCTTGATTTTATACGAATTGTGGACTTACCTT
TGTTATAAACTTTTTAATAACATGTGCTGATTTCTAACGCTCATCACACACAAAATCATA
TCGTTGTAAATGTGATCGCGAAAATCTATTGAGAGTGCTAAATGTAGCTCTAGAAAACAA
TAGTATTGGTGATGTTGAGCTTAGGTTGTAAGCGAACACCCGCTTATAATAGTCTTCCAT
CAAAAATCGAGAATGCTCTAAACGTGTTAAGCTATGAACCTAGACCCTTTAACGTTGAAC
TTATCACAAATCAATTATCTCGTCGTAAATTTAAGTAAGAAAAACTTCACGCAGACGTGT
CAAGAGTTATCTCAGCTTGTTGCACTGTACGGGTTGGAAGCTGAAAAGCAACTGTTAAGG
TGCTTGCTAAATGAAGCTGTTAAAACTATTTGGGACAGCGAGCATCCAAACTCATCCATA
AATAACAGCATTCATGCATCTTTGCTAAGCCAGCACCTGACATCACTACTGAATCATCCA
GCAAAATCTACTGTTATTTGTCGGACTGTTGATCAGCCTTCTCGTGCTGTCCAGAAGGTA
CTGAAACCGACAAATAATTTTTTTAATCGGCTTTCAAGATTGTTAAAGTTAACCACAGCA
GAGGATGTTGCCCTCTCTCTGGTGCTAAGGAGGAACTCAACAAAGACTGAAATTGTTGCT
CTCTCTAAGCAACATTTGAAGAAAAGATTTTTGGATTTAGTTCAATGCTACTTGGATGCA
GAACGGAGTCATCAGGCTGAACGTGCTGGGCTGCAGGAATGTAGCCCTGAAGTTTTGCAA
ACACTTCTTACCAGTCTTGCTCATGAAAATTTTCGTTTAGCACCAGTGACAAAGGACTTA
TTTTTAAAAAGGTTGCGTACAGACTTTCCCCGCGAAGTAGTACCTATAGTGTTAGCACCT
TTGTTATATCCTGATGACACACAAACTCCTCTAGTTGAGATGAGCACAGCTGACGACATG
GCCGCAGCAATGATGGATAATACGCTAGCGGAAGTTATACGTGACATAGGATATTCCTTC
ACAAGATCCGTTGACGATTGTAAAAGCAGTCTGATAAACTTCGGAGCCCGTGAACCAGCT
GCGATAGATGTTGCTCTATTAATATCTATGATGGTGCGATATCATAGCCCAGCACAGGAA
GGCCAAGATATCCAGACGCCGGGTAACTTCTGGATAAGTCACGATTCGAAGAAAGAACCT
GTTACACACGGTCCTAATGAATGGAATGCGGAAGTTTTTGTTCAGTCACTCAAGGATTTA
GCGTCCAATTTGAATTGGAAGGAAGTGATTCTTCAACTTGACCACTCAGAATTTTTTGTT
CCGGATAGATCTGGATTAAGTTTGCTTTTTACTATTTTGAGATTAGGTTTACAAAGCGCT
GGTTATCCAGCTAACTTATTTCCAGTTGAGTATCTCTGCCGAAAATGGACAAATTTAGAG
GGGCAAATGAGTCTTATCAGCAATATACTCAAGTTTCCAGACATTTTTAGCTTTGCTGAC
CATCCATTTCATCCTGTAGTGATAGACATACTAAAATCACCTCCTGAAACAGACAATAAA
GATGTGGGGACTTGGCGATGTCTTTATTTAGTTGAACTACTGCTGTATGCAGCAGAACGA
GGATACTACTTGCAAGTCCTTGATCTCTTTAAGACACCTCTTCAACATTGTCCTGACGTC
TTATTACTCGCTTTATTGCAAATAAATCCCCCTGTTACTGTTTTTAGACAGGAGTTATTG
ACAACACTCATACCAATTTTTTTGGGAAATCACCCGAATTCTGGTATCATACTTCATCAT
GCCTGGCACACTCAAAACCCTAACATGAAACCTATCATCATGCATGCTATGGCAGATTGG
TACATACGTGGGGAAAGTGATCAGTCTAAGTTATCAAGAATTCTGGATGTCGCACAAGAT
TTGAAAGCACTATCTCTATTATTGAATGTTCAATCATTTCCATTTGTTATAGACTTAGCG
TGTCTAGCTTCCAGAAGAGAATATTTAAAACTGGATAAATGGTTAACTGACAAAATCAGA
GACCATGGTGAGGCATTTGTATCGGCAATGGTGAAATTTCTGCACCGTCGTTGCCCACAA
ATGTTGGGGAAAATGCCTGAAGACCAATTACCGAAAGCTGCACAATTGCCGCCAGAGACA
ATAACCACTATGCTAGCTTGCTTGCAGCTATGCATTCCAAATGTCCAACAAGAGTTACAA
GAATCTATATACAATGTGATCGCTAACTGTCAAACAGTAATTTTAACTAAAACGAGACAA
AATATCGCTGGAATTTCGAGACCTCATACTAGATTATTGGAGACTCCATTCAATCCTGCT
GGATTAAGTGGACAGTTATTTACTCCGCACATGGATTCTATGAATAATCTAACCCAAAAT
GTAGCAAGTATGACTTTAGGTCCTCCTACAAATACAGCATTTGCTATGCCAGGAACGTTA
GGACCGTTAGTTACTGCGCCTGGTTCTCCAGTACGTTTAATGGGCGCCGGGCCTAACAGT
CCATTTGCTATGATGCCTATACCACATACAGTCAACGTAGCCAATATCGGAGCACTGGCA
AGGATGCCCCCAGCCCCGATGATGGACAAGTCCCGAATTCCAGATCCTATACATTACCCA
GAAACCATGCATAACGTAGCTAAAGAAATTGAAGATGAGGCAAATGGATACTTTCAAAGA
ATTTACAACCATCCTCCTCATCCTACATTATCAATCGATGAGGTGCTTGATATGCTGAAA
AAGTTTCAGGATTCTCAAAACAAAAGAGAACAAGACGTTTTCTCTTGTATGCTTAAAAAT
CTTTTTGAGGAATACAAGTTCTTTCCTCAATATCCTGATAAAGAATTACATATAACAGCA
CAATTATTTGGTGGCATAATTGAGAAAGGACTTGTACCGAGCTACGTTTCGCTTGGACTG
GCGTTACGTTTCGTTCTTGATGCTTTAAGAAAGGCAGAGGGCACTAAAATGTATTACTTT
GGGATAGCAGCCTTGGATAGGTTTAAGTCTCGTCTAAAAGACTATCATAAATATTGTGAA
CATGTCAGAGCAATTCCTCATTTTAACGAATTCCCTCCGCATTTAATTGAGTATATTGAA
TATGGTCTACAAAGTCAAGAACCACCTACAAAGCCACAGGGCCCTGTACTCCCTGCGAGC
TTGGCCGCTTTATTGAATCAAAATGCTGTGGGAACAGCTACAGGATCGTATCGGGCAGTG
GTATGTGCACCTACGTTCACTGTAATATCAAAGAACTGTCCTCCGAACAGTCTAGGCAGT
CGACCTTCGATCGCTAACGCTACTAACATTGATACACTACTCACAGCTACTGACCGCGAG
GAAAAGATCAACGCTCCCCCAGAACCTATACAAGACAAAACGGCATTCATTTTTAATAAC
CTAAGTCAATTAAATTTGCAAACAAAATGTGAAGAACTCAAAGAAATTTTAACTGAAGAC
TATTATGCATGGTTATCACAATATCTTGTGATGAAGAGAGCTTCGATTGAACTAAACTTT
CACGCGCTTTATTCCAATTTCCTTGATGTACTTAAAATTCGACAGCTAAATAAGTTGGTT
ACAAAAGAGACTTACCGCAATATTCGAGTTCTATTACGTTCCGACAAAGGAATCGCCAAT
TTTTCAGACAGATCTCTATTAAAGAACCTTGGTCATTGGCTAGGCATGTTGACGTTGTCC
AGAAATTTGCCAATACTTTTTATCGATCTAGATTTAAAAGCACTTATATTAGAAGCATAC
CACAAGGGACAACAGGAGCTGCTATATGTTGTGCCCTTTGTTGCTAAAATTCTGGAATCG
TGCGCTAAAAGTATTGCATTCAAGCCGCCGAATCCCTGGACTATGGCTCTAATGAATGTG
CTAGCAGAACTTCACCAGGAACCAGATTTGAAATTGAACTTAAAGTTTGAAATTGAAGTA
CTTTGCAAAAACTTATCACTGGACATAACAAATTTAAAACCATCTTTATATTTAAAAGAT
CCAGAGATGGTGAAACAGATTGAATTTCAACTGTCGCAACCCAAGCCAAGCAACGAGGTA
ATGCACGTAATGCCCATAAACCAGACATTAGTACTACCGCCACCACCGCCACCACCGGCA
ATACAAATGCTTCAACCGCCACCTCCGCCGCCGCTGTTACCTCCTGATGAAATGGGAGCA
ACATCTACAGCTGGGCTCATTGCAGGAGACCCATCGATAATGGGAATGATTGGAATTCCA
GAACCAAGGTTCAATTATATTGATGTGAATGTTACATCGACATCTACTTTCGACCAGAAA
ATATTCTTTAATCCTCACATATCGCTATTCCAAAGCTATCCCCATTTAAAACAATTTGTG
AAACCAGCAATTGATCGTTCAATCCAAGAATGGATTCATCCAGTAGTAGAGAGGGCTATA
AAATATGCTTTGACAACTTGTGAGCAGATCATTCGGAAGGATTTTGCTCTAGACCCCGAT
GAAGTACGTATGCGTACGTGCGCACACCACATGATGCGAAACTTGACTGCCGGTATGGCT
ATGATAACTTGTCGGGAGCAAATTATCACCACTATCAGTACCAACTTAAAGGCTGCATTC
ATCACTGCTCTCATGCCTTCGACACAGCAACAGAAGGATATTATTGAGAGCGCGGCTGCA
GTACTTGCTACAGACAACATGGAATTAGCGTGCGCTTTCATACAGAAGACAGCCGTCGAG
AAATCATTACCGGAACTCGATAAACGACTTATAAACGACTACGAGAATAGAAAAATTGCC
CGTCAAGAGGGTCGGCTATACTTTGATCCGATCGTGTTAACATATCAAACAGAACTATCC
GAGAAAATAAGGGCTCGTGTTGGCGGACCTTCAGAGATGCAAGTGGTCGTCTATGATGAA
TTCGCTTGCAACATTCCCGGCTTCATGCCGATCAGAGATGCTGGAATATTTATACCGAAA
CCACCTCAGGAACAGATGCCACATTTAACGTTTAATCAAATGATGAACCCTGCGCAAGTT
TACGTCGCGGACGAGATGTCTGGAATGATCACGGCTGCGGAAATGTTCCTCAGCAATTCA
ATAAACCATGCCTCACTCGCTATACATACAGCTCACATGCATTCTCTGCTTGAATGCATT
TTCATAGCGCGAAAAAACCGAGACATCGTCTCCGGATGTACATTGCTGCAAAAGGCTGTA
GAAGGTATTATCAACGGCTTGGTAGTGCAGCCGGGAGTAAGCAGTGAACATGTAGAAATG
GTCAGCCGCTATAGGGATATACATATACGTGTATTGAAACTCCTAGAAGTTTATGGTCAC
GTTTGGATAACGAAGCAGATTACAAGCTGCCTTACGGATTGCAGGGATGACCTCCGGTAT
AATATTGAAGCCGTCGATTGTCTTATCAGGAATCATCTCGTTAATCTGCCCCAGTACGAC
ATCACACTCGCACAATTGATGGACAACGGCAACAACTACATGGCGGTCGCGTTCGCTATG
CAACTCGTCCAGTTATATCTAGTCGACGACAGAAACAATATGTACGTGAACGAATCCGAG
CTGTACAACACTAGCGAGACGCTCGTCTGGATCGCGTCGCACTCGCGCCAGCCGCCGGAG
GGGCTCGGTACCCTCATAGAGGTGCTAAGAGTCAACCAGGACCCGAGCGCTTATCTGGGC
GAACACACTCCCATGGGACCGACGGCGCACATTCACGCGGCCATATTACAGATTCGGGCC
AAGAACTATGATGACCCGCCCGGCCTCCAAGAGAGGACAGAGAAACTCCTACGCGAGTGG
AGGAACATTCACATGAGTCCCCTCTCTAACATCGAAATAGGGCAGAACTTCAACTTGTAC
ATGCACCGTATGAATATGAACGGCGTCCTGAAATCCGACGAGATGGTGACGAGATTCTTC
AGAATCGCCGTACAAATGTGTATCGAACACGTGTACCAGTTGTTACAAGAGGAGAAGGCG
AATCCACCAGCGGCGCCTCCGAAACGAGAACTCTACTATACGATGTGTGATTCCTTTATC
AAGTTCGTTTCGCTGCTGATCAAGAACACGGGCGATAGTGGAAATCCTACGCCCAAACTG
AACCTGTTGAACAAAGTTCTGGGTATCATCGCCGGTTGCTTACTTCAGGATCATGAGGAG
CGTAACACAAACTTCCATCAGTTACCGTATCACCGTCTGCTGTTTATCCTCTTCCTAGAC
ATGAACATGGCGGATCCCGTTTTAGAAGCTATCAATTACCAAGTGTTAACATCGTTTTGT
CATACATTGAGAATCATAAGACCGAGCGTCGCTCCTGGTTTCACTTATGCTTGGCTCGAA
TTGGTTGCGCACCGTACTTTCATTAATCGTGTACTGGCTGCCACACCGCAACAAAAGGGC
TGGGGCATGTATTCCACATTACTGGTCGATCTGTTCAAATATCTCGAGCCATTCTTACGC
AATACGAAACTGGAGCCGCCGGTGATGACACTGTACAGGGGCACTCTCAGGGTCCTGCTC
GTGTTGCTGCATGACTTCCCGGAGTTCCTCTGCGACCACCACTACGGGTTCTGCGACGAG
ATACCACCGAACTGCGTGCAGATGCGGAACCTGATACTGTCCGCATTCCCGCGGAACATG
CGCCTGCCGGACCCGTTCACGCCCAACCTGAAGGTGGACTTGCTGCCGGAGATCACTCTG
CCGCCGCAAACGGCTGTCAACTACACGACTATTATACCGGGGTCACAGTTCAAGAAGGAT
CTAGACGCTTACCTCAAAGTGCGTGCACCGGTCACCTTCTTATCGGAGCTGAGGGGTCAT
ATGCAGGTCCTAAACGAACCCGGTCGCCGCTACAACAGCCAGCTGATAAATGCTGTAGTG
CTGTACGTAGGCACTCAGGCGATCGCACACATCCGCGCTAAAGGCCAAACGACAAACATG
TCGACTATAGCGCATTCAGCACATATGGATATCTTCCAGAACTTTACAGTCGATTTCGAT
TTCGAAGGACGGTATTTGTTCCTGAACGCAATCGGGAACCAGCTGCGTTACCCGAACAGC
CACACGCATTACTTTTCGTGCTGCCTCCTGTACTTGTTCGCCGAAGCGAACTTGGAAGCT
GTCCAGGAACAAATCACCAGGATGTTGCTCGAGAGACTCATTGTCAACAGACCGCATCCG
TGGGGTCTGCTCATTACATTCATTGAACTGATCAAGAACCCCGTATACAAGTTCTGGTCA
CACGAGTTCGTTCATTGTGCACCAGAAATTGAAAAATTAGTGTCTTCTTATTAATTATTA
TATAGTGTTATTATTACCTACTTACTGATTATATAAAAAAAAAA
(7424 bp)

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