SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_SariASG_c37737_g1_i1
Scaffold_id
NCBI non-redundant
(nr)		PREDICTED:_exosome_complex_exonuclease_RRP44_isoform_X1_[Amyelois_transitella]
Ontology
GO:0000175 F 3'-5'-exoribonuclease activity
GO:0000176 C nuclear exosome (RNase complex)
GO:0000177 C cytoplasmic exosome (RNase complex)
GO:0000178 C exosome (RNase complex)
GO:0003723 F RNA binding
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0004527 F exonuclease activity
GO:0005085 F guanyl-nucleotide exchange factor activity
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0006364 P rRNA processing
GO:0006402 P mRNA catabolic process
GO:0016020 C membrane
GO:0016075 P rRNA catabolic process
GO:0016787 F hydrolase activity
GO:0043547 P positive regulation of GTPase activity
GO:0071034 P CUT catabolic process
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
GO:0090503 P RNA phosphodiester bond hydrolysis, exonucleolytic
Transcript
Level		FPKM:2.70 TPM:2.61
ORF EntryO_SariASG14051_3prime_partial:A_SariASG_c37737_g1_i1
Sequence
(Nucleotide)
AGTAGGTGTTTGTGATTCTCAGAGAATGATGCTGTCCATTATCTGGTTTCTATCTGTCAG
TTGCCTTTTACGGCACTCACGGGAAGATATGGGGTGGTATTATTCTTGGCGGGCATCACG
TTATCTGCATTTAAATTATGACCGATGGTAAATAACCATAGCAATCAGGGTAATGGCGTA
TAATAATTTATTTGGGCTATAATAACATAAAAAATGCTTGGACAGATTCTGCTGCAAGGT
CATATAGGTATTAACAGAGCCGTGGATGGTGATATTGTTGCTGTAGAGGTTTTACCTGAA
GATGAATGGCGTAAGCCTAGTGATATTGTACTAGAAGACAAAGCTGAAGATCCCGGGGAC
CTTCTCGAAGAAGAGACGGTACTATTAAACGCTGTCAAATCGGTGAAGAAAGGCGATGAT
GAAGTGACACCGACGGGGAAAATCGTCGGTATTATAAGAAGGAAATGGAGACAGTACTGT
GGGATATTATTACCGAGCAAGTTTCCAGGTGCGACACGTCACTTGTTCACGCCGGCCGAG
AAGCGTATACCGCGCGTGCGTATAGAGACCCGACAAAGTGACTTGCTCGCCTCGCAACGT
ATACTGGTCGCGCTCGACTCGTGGCCGCGCAACTCGCGATACCCGCTCGGCCATTTCGTT
CGAGCGCTAGGCCCTATAGGTGATAAAGACGCTGAGAACGAAGTGATCCTGTTGGAACAT
GATGTCCCTCACGCGCGTTTCAGCGAAGCAGTTCTAAATTGTCTGCCTCCAACTGATTGG
GTTATACCCAAGGAGGAAATACAGAAACGGGTAGATCTTCGTAACATATGTATATGTTCT
GTGGATCCGCCCGGCTGTACTGATATTGATGACGCTCTCCACGCGAGACCGTTACCTGGT
CTCACTGAAGATGGACTGAAAAAGTACGAAGTGGGCGTCCACATTGCGGACGTCACATAT
TTCGTACGTCCCAATACGGCTATAGACAACGAGGCCGCTTCTAGATCTACCACTGTCTAT
TTAGTCGATAGAAGGATCGATATGGTTCCAGAATTGCTCAGTTCAAATCTTTGCTCATTA
CGCGGGGGCGAGGACAGACTCGCGTTCTCATGTGTTTGGGAAATCGATGAGAATTCGAAT
GTTCTCGCTACGAAATTTCATAAAAGCGTGATAAAGTCCGCAGCGGCTATGACGTACGAG
GAAGCACAAATAGCGATCGATGATCCGTCGCGTAAGGACGAGATCGCCGTATCGCTGCGA
ACACTCAACGCTTTGGCGAAGAAACTAAAGCAAAGAAGACTGGACAATGGTGCATTGTTA
CTCGCTTCTCCGGAGATAAGATTCCAGGTCGATTCTGAGACCCACGATCCCATAGACGTA
CAAGCTAAGAAGATAATCGATACTAATTCTATGGTGGAAGAGTTCATGTTACTCGCGAAC
ACGAGCGTCGCGGAGAAGATATTGACTGAGTTTCCTCAGTGTGCTCTACTGAGAAGGCAT
CCTTCACCGCCCGCTGCTAACTTCACTACTTTCCTCAAAGCGGCACAACAGCAGGGCTTC
GAACTGGACGTGACAACGAACAAATCGTTCGCGAAATCTCTAGACGTAGCGGTGTTGCCA
GACCGACCGTTCTTCAATACGCTGTTGCGCATAATGGCGACGAGGTGCATGCAACAGGCC
GTATACTTTGTCAGCGGATCCTGCGCCAGAGACGATTATCATCATTACGGTCTCGCTTGT
CCTATTTACACGCATTTCACTTCGCCTATACGCAGGTACGCGGATGTGATCGTGCACCGG
CTGCTGGCCGCCTGCTTGGGCTGTGATATAACTCACGCGGGGCTGCTCGACACGAAGCGC
GCCGGAGCCCTGTGCGATAACCTGAACTACCGTCACAAGCACGCGCAGTACGCGGGCCGG
GCTTCCGTCGCGCTCAACACGCACATATTATTCAAGAACAGAGTGGAAATTGAATCTGCT
GTAGTGCTGTCAGTGAAGCGTAATGCTCTTCAAGTGCTGATACCGAAATACGGGCTCGAA
GGACCTCTTTATTTACCCTCGGATATGTTTAAATATAATGAAGAGGAACATATACAAGTA
TGCAAGGGCGTTATATTGAAGACTTTCGATGAACTCACAGTCCGTTTAAGTCTAGATAGT
TCGAACCTACAGCATCAGAAATTACTATTTCAGTTAGTAAAACCGCATGTTCCCGGGTTT
AGCTATGACCCAGAGGATCAAAGCATGGAAGTTGACGAAGTGGAAACACCAATTAATGAG
ACTAAAAGAAGCGATACTATCACGAAAGACAAAAAAAGAAAAGAATTTGAGGGGAGAGAT
CGGAAGAGCGTCG
(2353 bp)

- SilkBase 1999-2023 -