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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_SariASG_c37558_g1_i1
Scaffold_id
NCBI non-redundant
(nr)		protein_CASC3_isoform_X3_[Bombyx_mori]
Ontology
GO:0000184 P nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006397 P mRNA processing
GO:0006417 P regulation of translation
GO:0006810 P transport
GO:0008380 P RNA splicing
GO:0016070 P RNA metabolic process
GO:0016607 C nuclear speck
GO:0035145 C exon-exon junction complex
GO:0048471 C perinuclear region of cytoplasm
GO:0051028 P mRNA transport
Transcript
Level		FPKM:12.91 TPM:12.50
ORF EntryO_SariASG13724_5prime_partial:A_SariASG_c37558_g1_i1
Sequence
(Nucleotide)
CGAATTCTCTTGCTTGTTTTGACTGCTTTGATCTTTCATTTGATTTTTGCTAAAACAAGA
AGGGATTTTTCTTGTTAGCCAACGAAAACGGGTGAAACCAACGCCACCTTGTGTTTTCAA
ATAATACATAATTTAAGCTATCAATCTGGAAGTTTTACAAGTGACCAGGGAGGACGCCAA
TATGACGTCCGTGGCTAGAACACGGGAACAAGATGATTCGGGAGAATATTCGGACGCATC
GCAAGATATTGAGAATAGTAACTCTTTGAACGATGGTCAGCAGGAGTCGGAATATGACTC
GCAAGCCAGCGAGTCTGACCGCTCCGACAGAGATCCTGAAAATCAGGAAACGGAACGTCG
AGTAGACGATGACGAGGATCGGAGTAACCCTCAATATATACCGAAAAGGGGTACCTTCTA
TGAACATGACGACCGTACGGCAGCCAGCGGTGAGGATACCACAAACACGACATCAGAGAC
TGCATCTGAGAAAAAGGAATCTAGTGACACTCCCGCTGAGAGACGCCGTCCGCCGCGCAA
GTCTGATATCGTTAACAAATGGTCTCACGATAAATATATTGAGAACGAACAGATACCAAA
AACACGCGACGAATTGGTGAATATTTATGGTTATGATATCAGGAATGAAGAAGCGCCCCC
ACATGCCAGACGGAATAGAAGATACGGGAGAGGTCCAAATAAATATACAAGAACTTGGGA
AGACGAGGAAGCGTACAGGCGACAGAACGCTGCACAACAACCCCGGAAACCACCAAACCC
TGAAGACTTCCCGGAGCTAGAAGCTTCTGCCAAGAAACCGGCTAGAAAACCCCGCGTCCA
GCGGCCGCGTTCTAAATCGCAGCCCGCGTCCAACGACTCTGCTGACAGCGGGCCGCAGCT
CCGTCGCAACGCGTCGATCAAAACGCCCAGACCCAAACCCGTGGCTAGACCTGCCCCGGT
TAAGAGTACAGCACCGAAGAACTCACCGAAGCCCCCGGAGAAGTTACCGCCTATCGAGAA
TCTCACTATAACGACAAACTTGAATAACAGTCAAGGTCAGAGTCAGCGGAAGGTGAGCTC
GAGCGTCGCGCAGCAGAGGCCCGTGCCCACGGACTTCGCCAGGAGGAAGCCCAACAACCA
CACGCAGCAGCAACAGAACAATCCGGTGCTGAATAATAAACAGTCGCAGTCGCAACAACA
GTCACAACAGAAACCGCAACAAAACCAACAACAGCAGCAACCGGCTGAAGGACGCGGTGG
AAGCAAACGCTACAGTAGCCTGCGACAACGGCCCCTTGGTGACTCTTATACGCCGCAACC
GCAACCGCAACCGCAGCCGCAACAGCAACAGCAGCCGCAGCAACAACCGCAACAACAACA
ACCACCGCTTCAACAACAACAGCAACCACTCCAACAACAACAGCAACCTCAGCAACAACC
GCAACCGCACAGATATCATGCCGGGACAGCAAGTGAATATCCCAGCGGTGGGAACAAGGT
CCAGCAGCCTGCCCCAAACCCGGCACAGCAGCAACACGCCCAGCATCCGCAACATGTAAT
CCATCCGGTTCACCGTAACGCATCCGTTCCGGCGGCGAGTCACGCGCCCTCCCCTCCCCA
ACCACCACAGCAGCACCCCCCACAGCAAC
(1649 bp)

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