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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_SariASG_c37484_g1_i4
Scaffold_id
NCBI non-redundant
(nr)		pre-mRNA-processing_factor_39_[Helicoverpa_armigera]
Ontology
GO:0000243 C commitment complex
GO:0000395 P mRNA 5'-splice site recognition
GO:0005634 C nucleus
GO:0005685 C U1 snRNP
GO:0006396 P RNA processing
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0030627 F pre-mRNA 5'-splice site binding
GO:0071004 C U2-type prespliceosome
Transcript
Level		FPKM:12.76 TPM:12.36
ORF EntryO_SariASG13608_complete:A_SariASG_c37484_g1_i4
Sequence
(Nucleotide)
GTTGTGTAATGGAGTTTGTTAAATAAGCTAGACTCAATACAACATCTGACTTGCAACATA
CAAAATTAAATGCTATTAAATATTCCCTTGCTTTGTGATAGTGTTGCCATGCGCACGGCA
ATGCACGGCAATGCTGGATTTACGCACGGGTGTGTGTTTACATGATTTTTAAATTTCAGG
TTTTGGAAAGAGGATTAAAAGCAATACCGTTATCAGTGGATCTCTGGATACATTATTTGA
ATCATATAAAAGCTACTAGAACTGAAGACTATACGTACATTAGATCGCAATATGAAAGGG
CCATAGAGGCCTGCGGTTTGGAATTTCGTTCCGATCGTCTTTGGGAGTCTTATATCAAAT
GGGAAGCTGAGAATGGGTCTGCGTTGAATGTTACGAATATTTACGATCGTCTACTGGCAA
CCCCTACACTTGGTTACACTTCACATTTTGATAATTTCCAGGAGCATGTGATGAGTGAAC
CAGTGGCGGGAGTGGTGACACGTGATGAAATCGTGCGGCTGCGGGCCGAAGTCCGGAATG
CGGCCGAAGCTCAGCCGCAGCTTGATCTCCCGCCCGGCGAAGACGAACCCATCGACCATG
TTGCTTCAGAGGAAGAGGGGCAGGCGATCAAAGAACGCATCATAGCGGCGCGGAGAAAGG
TACATAAGGCAACAGGTGAAGAAGTTGCAGCGAGGTGGAGTTTTGAAGAAGGGATTAAAC
GTCCGTATTTCCATGTGAAACCATTGGAGAGGTGTCAGCTGAAGAACTGGAAATCTTACC
TCGAATGGGAGAAACAACACGGCTCATTCAAACGCGCACTGATACTGCACGAGCGATGTC
TCATTGCGTGCGCATTGTATGAAGAATTTTGGATGAGATTGATAAAGTTTTTGGAAGAAC
GTGCCGAGAGCGATCCCGAATTGATTGCTATCGAACGGGAGGTTTTAGAGCGCGCGTGCA
CTGTACATCACCTGGACAAACCCGAGCTGCACTTACACTGGGCACACTTTGAAGAGGCCC
ACGGGAATACAACGAAAGCCGCTGAGATATTAGACAGGATAGAGAAAACTTGCGCCTGCA
TGGTTCAGATACAATACAGACGCGTGAACCTCGAGCGTCGTCGCGGCGATTACGACAAGT
GTTGTCAGTTGTATGAAGGGTACATCGGTATGGCGAAGAACAAGTCGCTGGCGTCCGCTT
TAGCGATAAAGTACGCGAGGTTCCTACTGCACGTGAGACACGACCACGTGGCCGCTAGGA
AGGTTCTCGACGACGCGGTCGAGAGGGATCCGCTGAACTCGCGCCTGCACATGCAGCGTC
TCGACCTCGCACTGCACACGCCCGGCACGGGGTACGAGGAGCTTGATGAATTGGTGCAGT
CGTATGAGAAGCAGGAAGGCGCCGAGCTGGAGATAAGCGCCGGGCTCGCGTGGCGGCGGC
GCGAGCTCGCCGAGGAGCTCGGCTCGGCGGCGGAGGCGCGCGCCGCGCACACGCACGCGC
GCGCGCTCGCCAAGCATCTGCGGAAACGCGCGCGCAAAGACAAACACGAACCCCTACCTA
CGAGTTGTTCCGATATGGTAAAGAAGAAAGAATGCGCCCCCGCCATGAACTGCGCACCGG
CTACTACTACTGGCAACAACAGCTCGTACTATCAGACGCCAGCGGCCACGGCCCAGTCGT
ACGACCAGTCGTACGCGCAGCCCTACCAGCCGCCGTGGGGATACCAGCAACCACCCGGAC
CCTACCAGCACCATCCCCACCCGTGGCCGACCCAGTACCCCAACTACTATTGACCCAAAA
CCTCCCCCTCCTTGTCTTGACAAGGAAGTCAAAGGGACGAATGTCTATAACGTATCGTCG
CTATAGTATTTTAAGATGTATTACGAAAGGTCATTTCATGAAGTTTTGTTAAAAAAAAAA
TAATTTATAAACAATATACAAGAGTGTAATTAATTTTCTTCAAGTATTTTTTTTTAGTTA
TTACATGAAATGTGAAAAAATTCGTGTAGATCCCATATGTATATATGGATTTTTTGATTG
ACCGTAATTTAAAAGAGTTTCAAACTTCCAGCTGAAAGAATTGTATGAAGTTCTGTATAA
AATCATAGATATTACATGATAACTAAGAAGGTACAAAAAGAAAAGATAAATTATAAGAAA
TAGCCTTAAAACCATAATATCTATTACTTTATAAATTTCATGGGAATAGTCGATTATATG
AACACAATAAAGTTTTGTATAAAAAAAACACAGTTAACCTTTTGAGAGTTTTGCCATTAA
TTACCTACTTATAATGTTTCGTGATTGAAATTGTTTATGTGTAGAGCTCAAAAATATATG
CGCTAAAATAAAATCATACATTATCGTCTTTAAATTAATACCTTTTTATATAACAATTAA
ATTTTATCGAACTCAAACATTTGAAAATTGGAAGGAGGTTGGGGGAGATAAATATAATTT
TAGGAAACCAACGTCACAGGTTGTCAGAATTCTGTATGAATTTGATTCTTTGGCGCACAT
AAAGTATGAACTAAACATTAACTAGATATGTCATATACCATCGACTTTTCCTATGAGGCT
GGCAGTCATCCAGGATGCACTGAAGCCTCGTTAATTGAATACATTAAAAGAAAATGGAAA
AATTTTACAGTATAAAAAATAATCTTCAAGTTGTGTATACTTACAATAAAAGGGTAAAGG
GACGAAATCTGTACATTGAAGATA
(2724 bp)

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