SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_SariASG_c37484_g1_i1
Scaffold_id
NCBI non-redundant
(nr)		pre-mRNA-processing_factor_39_[Helicoverpa_armigera]
Ontology
GO:0000243 C commitment complex
GO:0000395 P mRNA 5'-splice site recognition
GO:0005634 C nucleus
GO:0005685 C U1 snRNP
GO:0006396 P RNA processing
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0030627 F pre-mRNA 5'-splice site binding
GO:0071004 C U2-type prespliceosome
Transcript
Level		FPKM:12.19 TPM:11.81
ORF EntryO_SariASG13603_complete:A_SariASG_c37484_g1_i1
Sequence
(Nucleotide)
CTGAAGAATATTGAATATAGATGTTTTGAAATTAAAAATATTTCCGTATTTTTCAATAAT
TTCCAAAAATAAATTCGTTTTTCAATATGTCGATACTTGGTGGCTTCCCTAGTACGAATA
TTATTATTCTGTGTTTGTGATCGTGATTGATATAACAGGGACTGTTTCTGTTTCGAGAAT
ATTAGTTAGAAAGCTAGATTTATTGAGTTCGTATACATAAAACTTACTTCGCTGAAAATT
TGATATGGATGACGACAGTAGCTGCGATTTGCGGAAGTGTTTGACAGACGGCCCTATGGA
TACTGACGAGGGTCCACTGATTAATGAAAATTCGAATGGTTTATCACATTTATTAACAGA
GGGAGAGTTTAACAGTGTCGATGCAGGTGTTGCTGATGAATCGTCTATATCTAATCAAGG
CTTTTTAAATGCCGTCGAACTGTCAGCTGGCAGCGTTGGCGATTACCTTGAAAATAATAC
TACTGGATTTAACGGAGACTCGTTTGACGTTGGCGACAACGCTGTCACATTTCCTAGTGA
TGCACTACATAATGAACTAGCCGATGAAAACTCTCTTCTCAGTGACGCTCCTGTTTATAA
ATCTTCTGAAACAAGTGTTGACCCTCCAGAGAAAGTGATGACAGACACTGACTGTGAACA
TACTAATGATAATGTAGTAGAAAATTCTACACCTTGTTTCCAACAGAATGAGGAAGTCAC
TGAATCAGAAAACAATATCAATGAACCTGATAAATTTAAGTCATCATTAGATAGTGAGTG
TGTTGCATTAGAAAACAAAGATAAGGAAGAAGATTCTGCACCAGTTGAAAGCAAAGAATT
ATCTACTGAAAATACCAAGATTGGTAGTGCAGAAGAAACTGAAGTTGTCTCTGAAGATGA
ACTTCCAGAAGTTCAGAAACCAAGCATCAAGGATGCAGAGAATGTGTCAGATGATGAACT
ACCTGGACCAAAACCTGCAGAACTTCCAGCTGATACTGAGGTTGTATCAGAAGACGAACT
CCCTGCATCAAAGAAAGAAATAAAAGAATCAAGAAAACGTAAATCTGAAGATGATAGAGA
TGGTTATGATCCAAGTTCACCAACATCAGAGAATGAATCATCTAATAAAAAACAAGCCAT
TGCGAAGAATGGCGAAAGTAAACCAATACCTGCTGAGAAGAGATTGTCTGTTGAAGAGAA
ACAAAAAAAGAAAACCCTACCAGAACTAGACAAGTACTGGAAGGTGGTCAATGATGATCC
GACTGACTTCACTGGATGGACATACCTCCTGCAGTATGTAGATCAAGAGAGTGATGTGGA
GGCGGCTCGAGAGGCGTACGACGCTTTCTTATCCCACTATCCTTACTGTTATGGATATTG
GAGAAAGTACGCTGATTATGAAAAGCGCAAAGGAAGTAAAAAGAAGTGCTTAGAGGTTTT
GGAAAGAGGATTAAAAGCAATACCGTTATCAGTGGATCTCTGGATACATTATTTGAATCA
TATAAAAGCTACTAGAACTGAAGACTATACGTACATTAGATCGCAATATGAAAGGGCCAT
AGAGGCCTGCGGTTTGGAATTTCGTTCCGATCGTCTTTGGGAGTCTTATATCAAATGGGA
AGCTGAGAATGGGTCTGCGTTGAATGTTACGAATATTTACGATCGTCTACTGGCAACCCC
TACACTTGGTTACACTTCACATTTTGATAATTTCCAGGAGCATGTGATGAGTGAACCAGT
GGCGGGAGTGGTGACACGTGATGAAATCGTGCGGCTGCGGGCCGAAGTCCGGAATGCGGC
CGAAGCTCAGCCGCAGCTTGATCTCCCGCCCGGCGAAGACGAACCCATCGACCATGTTGC
TTCAGAGGAAGAGGGGCAGGCGATCAAAGAACGCATCATAGCGGCGCGGAGAAAGGTACA
TAAGGCAACAGGTGAAGAAGTTGCAGCGAGGTGGAGTTTTGAAGAAGGGATTAAACGTCC
GTATTTCCATGTGAAACCATTGGAGAGGTGTCAGCTGAAGAACTGGAAATCTTACCTCGA
ATGGGAGAAACAACACGGCTCATTCAAACGCGCACTGATACTGCACGAGCGATGTCTCAT
TGCGTGCGCATTGTATGAAGAATTTTGGATGAGATTGATAAAGTTTTTGGAAGAACGTGC
CGAGAGCGATCCCGAATTGATTGCTATCGAACGGGAGGTTTTAGAGCGCGCGTGCACTGT
ACATCACCTGGACAAACCCGAGCTGCACTTACACTGGGCACACTTTGAAGAGGCCCACGG
GAATACAACGAAAGCCGCTGAGATATTAGACAGGATAGAGAAAACTTGCGCCTGCATGGT
TCAGATACAATACAGACGCGTGAACCTCGAGCGTCGTCGCGGCGATTACGACAAGTGTTG
TCAGTTGTATGAAGGGTACATCGGTATGGCGAAGAACAAGTCGCTGGCGTCCGCTTTAGC
GATAAAGTACGCGAGGTTCCTACTGCACGTGAGACACGACCACGTGGCCGCTAGGAAGGT
TCTCGACGACGCGGTCGAGAGGGATCCGCTGAACTCGCGCCTGCACATGCAGCGTCTCGA
CCTCGCACTGCACACGCCCGGCACGGGGTACGAGGAGCTTGATGAATTGGTGCAGTCGTA
TGAGAAGCAGGAAGGCGCCGAGCTGGAGATAAGCGCCGGGCTCGCGTGGCGGCGGCGCGA
GCTCGCCGAGGAGCTCGGCTCGGCGGCGGAGGCGCGCGCCGCGCACACGCACGCGCGCGC
GCTCGCCAAGCATCTGCGGAAACGCGCGCGCAAAGACAAACACGAACCCCTACCTACGAG
TTGTTCCGATATGGTAAAGAAGAAAGAATGCGCCCCCGCCATGAACTGCGCACCGGCTAC
TACTACTGGCAACAACAGCTCGTACTATCAGACGCCAGCGGCCACGGCCCAGTCGTACGA
CCAGTCGTACGCGCAGCCCTACCAGCCGCCGTGGGGATACCAGCAACCACCCGGACCCTA
CCAGCACCATCCCCACCCGTGGCCGACCCAGTACCCCAACTACTATTGACCCAAAACCTC
CCCCTCCTTGTCTTGACAAGGAAGTCAAAGGGACGAATGTCTATAACGTATCGTCGCTAT
AGTATTTTAAGATGTATTACGAAAGGTCATTTCATGAAGTTTTGTTAAAAAAAAAATAAT
TTATAAACAATATACAAGAGTGTAATTAATTTTCTTCAAGTATTTTTTTTTAGTTATTAC
ATGAAATGTGAAAAAATTCGTGTAGATCCCATATGTATATATGGATTTTTTGATTGACCG
TAATTTAAAAGAGTTTCAAACTTCCAGCTGAAAGAATTGTATGAAGTTCTGTATAAAATC
ATAGATATTACATGATAACTAAGAAGGTACAAAAAGAAAAGATAAATTATAAGAAATAGC
CTTAAAACCATAATATCTATTACTTTATAAATTTCATGGGAATAGTCGATTATATGAACA
CAATAAAGTTTTGTATAAAAAAAACACAGTTAACCTTTTGAGAGTTTTGCCATTAATTAC
CTACTTATAATGTTTCGTGATTGAAATTGTTTATGTGTAGAGCTCAAAAATATATGCGCT
AAAATAAAATCATACATTATCGTCTTTAAATTAATACCTTTTTATATAACAATTAAATTT
TATCGAACTCAAACATTTGAAAATTGGAAGGAGGTTGGGGGAGATAAATATAATTTTAGG
AAACCAACGTCACAGGTTGTCAGAATTCTGTATGAATTTGATTCTTTGGCGCACATAAAG
TATGAACTAAACATTAACTAGATATGTCATATACCATCGACTTTTCCTATGAGGCTGGCA
GTCATCCAGGATGCACTGAAGCCTCGTTAATTGAATACATTAAAAGAAAATGGAAAAATT
TTACAGTATAAAAAATAATCTTCAAGTTGTGTATACTTACAATAAAAGGGTAAAGGGACG
AAATCTGTACATTGAAGATA
(3980 bp)

- SilkBase 1999-2023 -