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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_SariASG_c37411_g1_i4
Scaffold_id
NCBI non-redundant
(nr)		DNA_ligase_3_isoform_X1_[Helicoverpa_armigera]
Ontology
GO:0000166 F nucleotide binding
GO:0000724 P double-strand break repair via homologous recombination
GO:0003677 F DNA binding
GO:0003909 F DNA ligase activity
GO:0003910 F DNA ligase (ATP) activity
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005739 C mitochondrion
GO:0006260 P DNA replication
GO:0006266 P DNA ligation
GO:0006273 P lagging strand elongation
GO:0006281 P DNA repair
GO:0006283 P transcription-coupled nucleotide-excision repair
GO:0006288 P base-excision repair, DNA ligation
GO:0006297 P nucleotide-excision repair, DNA gap filling
GO:0006302 P double-strand break repair
GO:0006310 P DNA recombination
GO:0006974 P cellular response to DNA damage stimulus
GO:0007005 P mitochondrion organization
GO:0007049 P cell cycle
GO:0008270 F zinc ion binding
GO:0016874 F ligase activity
GO:0033151 P V(D)J recombination
GO:0043504 P mitochondrial DNA repair
GO:0046872 F metal ion binding
GO:0051103 P DNA ligation involved in DNA repair
GO:0051301 P cell division
GO:0070421 C DNA ligase III-XRCC1 complex
GO:0071897 P DNA biosynthetic process
GO:0090298 P negative regulation of mitochondrial DNA replication
GO:0097681 P double-strand break repair via alternative nonhomologous end joining
Transcript
Level		FPKM:4.59 TPM:4.44
ORF EntryO_SariASG13478_complete:A_SariASG_c37411_g1_i4
Sequence
(Nucleotide)
CTGTGCGATATTTCATGTTTTGAGTTGTTTTCTTCATCATGTAAACGTTTTATTTTTTTG
TGATTATTGTTGTGTGTACTATATTTTGTTTTATGTTTGTGTGAAATTATTTATGAACTT
TTACGTAATAGATTTATAATTCGTATTATTCAATTCAACAGAATATCGTCGCTTCCAAAG
TATGAATCATATTCATAAAATGAATTAGGAACATATTGTGCATAGAAAGATGTCGGAAAC
AACACCTTTTTATGTCGATCGAGCGAAAGGAGGCCGTGCTTCATGTAAAGGATGCAAAAC
GAACTGCCACAGCGGAGAATTACGCATAGCGAAAGTTGTTCCGAGTCCTTACGGAGATAA
CCAACAAATGAAATCATGGTTTCACATAGATTGCTTTGTCAACGCTCTTTTAAAACAAAG
ACCTGTTACGAAACGTGTAGATTCAATAGATGACATTGGGAACTGGGATAGTTTGAATCA
GGATGATCAAGAATCCATACTTAAGAAATTAAATGAAATGGAAAAATTATATGCTGAGAA
AAATAGTGGAAAATACACGGCAAAACAGATCAAAAACCAACGTAATTCTTCCAAAATATC
TGAAACGAAAATTAAACAGGAAGTTAAGAATGATACAAATCATGAAGCAGACAGTGATGA
TAATAAATTTTCTACATTTTTTAAATTGTGTAAAAAAATATCAAAAGTTGATGCTTACAC
AGAAAAGACTGCAGCTGTTAATAATTTCTTTAGTAAAGGTACTAACAATGACTCGTTTAA
AGGAGATTTAGCCTTGTGGTGTAAATTACTTCTTCCCCAAGTATCAAAGAGAATTTACAA
TTTAAAAAGTAAACAGCTTGCAAAACTATTCTCAAAAATATTCCTCATAGACCATGATGA
CATGCTAACACACTTGGAACAAGGTGATATTGCAGATACTATACAACATTTTTTCTCAAA
GTCAAGGACTGCACGACCATCAAATGTGAGCACATTAACTATTCATGATGTTGAAAATTT
CCTTGAAGAACTTTCTAAATTAACTAGAGAAGACGAACAAATATATCAGTTTAAGAAAAT
TGTTGCTAAATGTACTATAGAAGATATGAGAATGCTTATAAGACTTATAAAAGGAGATTT
GCGGATTAATGCAGGACCAAAACATATATTAGAAGGGGTTCATCCAGATGCATATAACAT
TTTCCAGACTTCAAGAGATCTTAACATGGTTTTAGAGAGAGTTCTAGGAAATAATATTAG
CTTCAATAGTAAAAATGTTACGAAAAGAAGTGTTGAGGCTAAATTGTCTCTAATGACTCC
GGTGTTACCAATGTTAGCAGAAGCCTGTAAGTCTGTAGAAATGGCAATGAAAAAATGCCC
AAATGGTATGTTCTCTGAGATTAAATATGATGGGGAAAGAGTACAAGTGCACAAAAAAGA
GAATGAATTTAAATATTTCTCTCGTGCCCTCAAACCAGTTATGGCACATAAAGTGCGCCA
TTTTAAAGATTATTTGCCCCAAGCATTCCCCAAAGGAGTTGATTTGATTCTTGATGCAGA
AGTATTGATGGTTGATGTTAATACAGGCAAACCTTTACCGTTTGGTACCTTAGGTGTGCA
TAAACAATCAGAATTTAAAGACGCTCAAGTATGTCTTTTTGTGTTTGATTGCCTTTATTA
TAATGGCCAAGTGTTAATTGATTTACCTATAAGAAAGAGGCGAAAGATTCTGGAAGAAAA
TATGGTGGAGGTTAAAAATCATGTAATGTTTTCAGAACAAGAGTTAATTAGTAAGCCATC
AGACTTGGCAAAGATGATTGCTGAGGTATTAGAACTTGGTTTAGAAGGTCTAGTCTTAAA
GGATTTAGAGTCTACTTACGAGCCTGGAAAGAGACATTGGTTAAAAGTGAAGAAAGATTA
CTTGTTTGATGGTGCAATGGCTGATACTGCAGATCTTGTTGTTCTTGGAGCTTGGTTCGG
TACTGGCAAAAAAGGTGGTATGATGTCTGTTTTTCTAATGGGTTGTTTGGACACATATCG
TAATCATTGGGTGACTGTGACTAAAGTCCACACAGGACATGATGATAGCACACTAGAGAG
GCTTCAGAAAGTTCTGGGCCCACTGATGGTGAAGATATCACAGGATTACAATAAGGTGCC
ATCATGGTTACATTGCAATAAAGGAATGGTTCCTGATTTTGTTGCTTTGGATCCTAATAA
CCAGCCTGTTTGGGAAATAACAGGTACCGAATTAACTAAAGCAAACCAACACACGGCCGA
TGGAATATCTGTACGGTTTCCTAGAGTGACTCGAATGAGACCTGACAAAGATTGGCAAAC
TGCAACCAATTTAGAAGAACTCAAAAATCTCTATAAGACTTCAAAAGAAAAAACCGACGT
TTCATTACTCAATAAATTAGCAGCAAGTGCCTCTGAATGTAATGAGAGTCCAGTGAAAAA
GAAGATTAAACTTAGTCCTAAAAAGGGTAAAATAGATCGTTTCTTAGTGAAAACAGAGCC
AAACGATGACGAAAAAGCAAAGAATAACTCTAAAAACAATGATTTCTTAAGAAATAAATC
AAAAGACATCAAGAATGAAAGTTTTAATAGTTCTATAAATGAATCAGATTCGAGTTTTAA
CATGAGTTTTGATGAAACCGACTCTTTGGTTAAGAAAGAAATTATGAATAAAAAGAGAAA
AACCGAAATTAACAGTTCAATTATAAAACCTGAGATGGATATGGAATTTAATTCTAAGAA
AGGAAAGGATATTCAGCTGTTACCTGAAAATCCTTTACCTGACGCTTTTAAAGACAAAAG
ACTAGGTTTTTATCCGGACTTTATATCGTTTCCTGAGAAAGAAAGGAGACATTTTGAAAG
ACATTGGATTGCATATGGCGGTGTAGTTGTGAAATCTGTGCGTTCTGTGGACGTTGATTA
CGTTGTACACAATAATAATTCTATAACATTGAAAAATTTGGAAAAGTTAAAACGTAAACT
CAAGTGTAAAAACGTAAAACACGTCAGGAAGAGTTGGTTAATAAAATGTATTGATGAAGT
TAAATTATTTGATACGGTGAAATTTTACGTTTTCGTTGAACCTTAATTAAGATATCTGTG
ATATATTTGTTTTTTATACGGCTAAAAGTGTTTTATTTTTATGTCCCTCGACGATAATTC
TGCC
(3184 bp)

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