SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_SariASG_c37209_g1_i1
Scaffold_id
NCBI non-redundant
(nr)		LOW_QUALITY_PROTEIN:_E3_ubiquitin-protein_ligase_UBR1_[Bombyx_mori]
Ontology
GO:0000151 C ubiquitin ligase complex
GO:0000785 C chromatin
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005886 C plasma membrane
GO:0006342 P heterochromatin assembly
GO:0006511 P ubiquitin-dependent protein catabolic process
GO:0007141 P male meiosis I
GO:0007283 P spermatogenesis
GO:0008270 F zinc ion binding
GO:0016567 P protein ubiquitination
GO:0016874 F ligase activity
GO:0030163 P protein catabolic process
GO:0032007 P negative regulation of TOR signaling
GO:0033522 P histone H2A ubiquitination
GO:0046872 F metal ion binding
GO:0061630 F ubiquitin protein ligase activity
GO:0070728 F leucine binding
GO:0071233 P cellular response to leucine
GO:0071596 P ubiquitin-dependent protein catabolic process via the N-end rule pathway
Transcript
Level		FPKM:22.59 TPM:21.87
ORF EntryO_SariASG13102_complete:A_SariASG_c37209_g1_i1
Sequence
(Nucleotide)
GGCGGGGGCGTCGCCGTCGCCGTCATGCAGAACGACTTCCGAATGTGGAAAGCGGCCAGG
AACGCCTGGCACCGGTTCCTCATTGCTTCCACGCTCATGGACTACGAGAGCAAGAAAACA
TTGGCCATACTATTCACAAAGAATTATGGTTCGATATTAAAGGACTTCATAAGGGATGAT
CACGAACACTCGTACTCTATATCGTCCCTCTCGGTGCAACTGTACACGACCCCCTCGATA
GCGCACCATTTGATAGCGAATTACGACGCCCTCTTTGTCGTTATGAACACGTTCGTCAGC
GAATGCAATCGACGTTGCACCGATGGTCGGCTCTCGTTCGATCGTAATCAAGTATCGGTT
GCGTTCAAACGGGCCCAGTTTATACTTTACGACGTGAAGTACCTGCTCAGTTCGATACCG
ACGACATTCGATGATGACCTACGGAGAGGCTTTCTACATGGCCTCTCGCTTATGCTCAGC
CTCTTGGTCATGATGCAGGGCATGGACTCGGTCGTCAGGCAGGTCGGGCAGCATATGGAG
TACGAACCCGAGTGGGAGTCAGCATTCAATCTGCACGTTAAGTTAGCGCCCAGCATCACC
CTCTTGCTGGAGTGGTGCGGCGCAGACAAACTGCTAACAGTCAGTGCTTACAGGATGGCA
CTCCGGAGGCACGCAGACACCTACACACCCCCACCTAGAGTCGTCAAAGAACTGGGTGAT
CAAAGTGCGTTGGTGATACCATACGACGTGTCAGCGGAACCGGTGTCCATACACCGGCCC
CTGTCGCGGTTCATAGCGGGCTTGCACCTGTCCCTCGCGAAACACGCCCTCAACTACCAC
AGCCGCGAGTTCGACCGCCCGGATGTGCCGAAACCCACCCCCGAGGAACTGCTCGAACCG
GTGCTACAGACGATGGCGATGATAGCGCAAGTGCACGCGGGGATGTGGCGCAGGAACGGG
TTCGCACTCCTCAACCAGCTGTACTTTTACCATAATGTCAAGTGCCGGTCGGAAATGGCC
GACAGGGACGTCATCATGATGCAGATAGCAGGATCGTTGATAGATAGCGATCAGTTTATA
ATCCACATCCTGAACAAGTACAATCTGTTAGAATGGGCGAGGCCGGACTTTGAACAGAGC
AATATCGAGGACAATACTCTCCGGCACACGATCAGCATGGTCGAAGAGTTCCTGGGACTG
CTCATCATTATAATTGGCGCTCGGTACACGCCCGGAGTTGGCGATGTCTCAGTCGAAGAC
AGAATCATGAAGGAGATAATCCAGTTGCTATGCGTTAAACCGATGCCGCATTCCGAACTA
AACAGGTCTCTAGCGGAGGACCAGCTCCATGAGACCGGCATCGAGAGTGTCATCGAGACG
GTCGCGGATTTCATAAAGCCGACGAGCCTGAACCACCGCGGCATTTATAAACTGAAACCG
TATCTTTACTCGGAGTACGATGCGTTCTACTATCACTACACGCGCGAGGAACTCTCCAGA
AGCGAGGAGGAACAGAGGAACAGGAGGAAGGCTGCCGGTCTATCGGAGTGCTGCCCCCCG
CCGTCGCTGCCGAAGCTTCTGGAACCGTTCCACCTGGTCGTTAACCTGCTGCAGTGTGAT
GCAACGTTCCACGTGTTCCGGCTCGTCTTCGAACGCGCCCTCGACCTACGAGCCAGGTCC
TTCTCTGAGATGCAGATCCATAAGGCGCTTCATCTGATTGGTTACGCGATACGTGAAGAG
GAAGCGGGTTACTATGAGTTCTTAGCGTTCTCACAGCGAGCGGAGCGGCACGGGCTCGTG
GCGCTGCTGGAGAAGCTGGTCCTCAGTCCGAGGGTCGACGCGCACAAACACCTCGCTAAA
TGGGTCCTCACTAAGATCAAAGTTTTGCTAGGCCAAGTCGAAAACGAGAACGTGGGAGAG
AAAATGGATACCAACCAAGAAGAGAATCCCACCAATGAAGTTGCAGAAGCAGAGAAGGCG
AGACGTGCGAAGTTAGCAGCGGAACGTCGAGCAAAGCTAATGGCGCAGATGAAAACGCAA
ATGAATAATTTCATATCCAACAACGCAACGTTGTTTGAGGAAACCAATACCGAGGTGACG
GCAGACGAGCAGGATCTACGTCCGATGTATTGCGGTACTGCACTCGGTGTGTGGGGGGGA
GGTGTGTCGGATCCCATGCGCGTCTGCATCATGTGCCAGGAGGAGGCGCGTGTCGATATG
AAAGGTGAACCGATGGTGTTGGTAGCTTACGTACAGCATTCGACCGTGTTGAACCGTTGG
CGTGGCGTGGACGGGTGGACCGCGACCCTGGGTAACGGGGGAGCGGGTCGGGGCGCGTGG
CTACCTGCCGGGGTCGGTCTCCAGCCGCACGTGTCCAGTTGCGGACACGCGTTGCACGCG
CGCTGCTGCCGCAAGTACGTCGACAGCGTGCAGGACAAGGAAAACAGAAGACCTTACCGA
ATACGACAACCGGCGGCATTCGACATCGGGAACAAGGAGTACCTCTGCCCGCTATGCGAG
AGGCTCTGCAACACAGCGCTCCCGTTGCTACCGGCGCCGCCGATGCCGGCTGGCGCTCCG
CCCCAGCTCACGGGGCGAATGTACTGGGAGTCGGTGAACAAGATCCTCATGTTCAAGCAC
CAAGTGTGCTCGGAGTCGGTCCACGTGTGTACTGAGACATGCGAGGAGATACACTGTCAG
GCGCGGGCTAGGAGCGTCGGGGCCATGTCCTCGGACATGGAGGAGGAGCCCAACGACGTC
ACTGAGGTGTACGTCGCGACGCACTCTCAGAACCTCCTCTCGGCAGAGTTCATGAACCAT
TTCAACGAGGAGATACCAAACTATAACGATACAGCGAAGAAACTCATCGAAGAATTCATG
AATGTGTTGCCAGTGTACCAACCGGGCGGGCTGGCGATGAGCTCAGCGCTGTACCGCGCT
ATTTCCTACACGATAATGTGCACGAACGCGATCCTGCAAGTGGAGTCCCGTCCCCTGCTA
GTTGAGGTACCGTCCAGGCTGCGGGACACTCTCCAAGCATTGATACGCCTCGGAGCTGCG
ATGCCCTCGCTCTGGTCGTCGCCCAAAGACCTGGCGCATCACGCCTGGAGCTGCCTGAAC
ACACTGGAGAACACCTCACCGCTGACGCACTGCCCCTTCGGAACGCTAGTCGCGCTAGTA
CTGGCCATGCCTACGTTGTTCGGCAAGGAGGGCCCTCCAGCCAGGCCGACGCACCTAGCC
AGACAGTTGACCATACAGGCGCTCCGGGCTGAACTCTTCAGAGCGATCCTAGTTATCGAT
ATAACCGGCTGCACCGTTCAAGATAATTACAAATCGAAGCCGGATCTGGAAAAGTTGCTG
GGCATCGTTAAAGACATACGCAAAGACGGCGATCAGGATTATGAAGGTTTGGACCCGAAT
AAAGTCTGGGAAGCTATCAAGAAACAGTGCCACACGTTCTTGAGATGCTGCTGTATATTT
TACCACTTCTTGAGTGATATCGACCCACCTACAGAGCTGACGGAGGCCGGAGGGGATAGT
TGGGACGTGATGTGCGGCTACTTGGACTTGCCGAAGACCTTCAGAGAACTGATATGCAAC
CTCATCGGGTTGGAGAAGACTCGTTGCTGGGGTTATTTGTCATCAGCCTGGTTCAGCGGG
TCGATAAACCGCCAGATAGTGACGGAGCCGGAGGAACCGCCTCACCTGACCGCGTTGCCG
GAGGACTTCTCCGAGATAATAAACGTGGTGACGCGACTCCCCTGCCCCACGTCCAGTGAC
GAGGTGATTAAGAACCCGACGCTGTGCCTCATCTGCGGGCAGTTCATGTGCTCGCAGAGC
TACTGTTGCCAAGCGGAATTACCTAAGTTCGGTCGCGAGGGCGCGGCGGGCGTGGACCGC
GTCGGCGCGGTGATGGCGCACGCGGCGAGCTGTGGCGGCGGCTGCGGGCTCTTCCTGCGC
GTGCGCACCTGCGAGCTGCTGCTGGCCTCCGCCCCCGCGCGCGGCGCCAAGCTCTCCGCC
CCCTACCTCGACTGCTACGGGGAGACCGACCAGGGTCTGGGTCGCGGGAATCCGCTCCAC
CTGTGCCCGTTACGTTACGAGTCGCTGCGGATGCTCTGGCTGAGCCATAGTGTGCCCGAG
AGGATCGCGCGCATGCTTAACACCAACATGCTGGCGACAGTCACCTGGCAGAACTACTAG
CCCACCTGCCTGCCACGTGCCACTCTACGAATCGATTACATTTATATATATATATATAGC
GATTCACAGATTTTTATTATATTATTAGGTGACGTACGAGTTTTATTTAATAACGGAATG
ATCTGCAATGTTTCAATTATAATAATAACAATGTTATTATTATATGGATTCGTTTTTTTT
TCTTATCTTTTTATAAGATTTCTTTTTTATGTCTTTGATGAACTCGAACACGATAGTTAC
TTATTGCAAATTAGAAGGGGGGAG
(4464 bp)

- SilkBase 1999-2023 -