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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_SariASG_c37140_g1_i1
Scaffold_id
NCBI non-redundant
(nr)		RNA_polymerase_II-associated_factor_1-like_[Papilio_xuthus]
Ontology
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0000993 F RNA polymerase II complex binding
GO:0001711 P endodermal cell fate commitment
GO:0003682 F chromatin binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006368 P transcription elongation from RNA polymerase II promoter
GO:0006378 P mRNA polyadenylation
GO:0010390 P histone monoubiquitination
GO:0016020 C membrane
GO:0016055 P Wnt signaling pathway
GO:0016570 P histone modification
GO:0016584 P nucleosome positioning
GO:0016593 C Cdc73/Paf1 complex
GO:0019827 P stem cell population maintenance
GO:0030054 C cell junction
GO:0031062 P positive regulation of histone methylation
GO:0031442 P positive regulation of mRNA 3'-end processing
GO:0032968 P positive regulation of transcription elongation from RNA polymerase II promoter
GO:0033523 P histone H2B ubiquitination
GO:0034504 P protein localization to nucleus
GO:0045638 P negative regulation of myeloid cell differentiation
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0071222 P cellular response to lipopolysaccharide
Transcript
Level		FPKM:15.09 TPM:14.62
ORF EntryO_SariASG13024_complete:A_SariASG_c37140_g1_i1
Sequence
(Nucleotide)
TCTTCCGATCTGCGAGACGTGAAACATACCTTGAGATTGTGATTTTAATTTTTTTTGTCT
AATTTTTGAAATGAAATAACTCGAATGAAATAAAGATGCCTCCTACAGTACAAACAAATG
AACCGGACAGAGAGAAACGTCCACAAAGAACAGGAGAAAGAAGGTCCGAGCTCGTTACAC
GTGTGAAATACTGTAATACGTTACCAGACATACCATTTGATTTAAAATTCATAACGTACC
CGTTTCCTTCAACTCGCTTCATTCAATATAATCCAACATCTTTAGAAAAAACTTATCGGT
ATGAAGTGCTAACGGAACACGATTTGGGAGTTCATATAGATTTGATCAATCGCGATACAT
ACCAGGGAGATGGAAACGCAGTGTTAGACCCAGCAGATGAGAAACTACTGGAAGATGATG
TCCTTACACCGCAAGATTCAAAGAGATCGCGTCATCATGCTAAGAATGTTTCTTGGTTGC
GTCGTTCTGAATACATATCTACAGAGCAGACAAGATTCCAACCTCAGAGCATGGAAAAGG
TTGAAGCGAAAGTTGGTTACAATGTCAAAAAGATATTCAGCGAAGAGACACTGTACATGG
ATCGTGATAGTCAAATTAAAGCTATTGAAAAAACCTTTGAGGATAACAAAAAACCCATTG
AGAAGCATTACAGCAAGCCAGGTGTTACACCAGTCGAGATCATGCCAGTTTTCCCAGACT
TTGAAATGTGGAAGTATCCATGTGCTCAAGTTATATTTGATACTGACCCAGCTCCGGCAG
ATAAAAATATAGCTGGACAGATTGAAGCCATGTCCCAGGCTATGATTCGAGGTGTGATGG
ATGAAAGCGGTGAACAGTTTGTAGCATACTGTCTCCCAACGGAAGAGACTATACAGAAAC
GTCGACGCGACATCACAGAAGGTATCCCATATTTGGACGGCGACACATATGAGTACAAAA
TGGCTAGGGAATATAACTGGAATGTGAAGAGTAAAGCCTCCAAAGGCTATGAAGAAAATT
ATTTCTTGGTGATGCGCAATCATTGCGTGTATTACAACGAGTTGGAAACGCGAGTGCGAT
TGTCGAAGAGGAGAGCGCGGGCCGGAGCAGTCGCTCAAGCTCTCACTCGACTGGTCGTCA
CCCATCGGCCGCTAAGCGGTCCGGAACACCGCATGCTGCGTCTCAGAGAGAAACAATTAG
AACCGCCCCAGGAGGATGATGAAGAAGAAGAGGACGAGGAAGAAGACGAAGAAGAAGAAG
AAAAGCAGGAGCAGACTGAAGAGAAAGAGAGGTCCCGTTCAAGATCTAAATCAGGCTCAA
AATCACCCCAAGGTTCGGAAAAGTCGAAGAGATCGAACAGATCAAAAAGTCGATCTCGTT
CCGGATCTAGGAAGTCTAGATCGCGTTCTGGATCAGTACAATCTAGATCGGCGAGGTCTG
GTTCGGACCGTTCAAGGTCAAGATCCAAATCTGGATCAAGGGCTTCCTCCCGTGCCTCTT
CACGTGCTAGCTCCAAAAGTGGAAAGGGCTCTCGCGCCAGTTCTGGCAGTAGAGGTTCCA
GAGCTAGTTCTAAAGGCAGCGGCAAGGGTTCAAAGGTTAGCTCCAGAGCTAGTTCCCGCG
CTTCGTCACGTGCAAGCAGAAGGTCTTCGAGAGCATCATCACGTGGTTCACGTGCCTCGT
CCAAGGGGTCTGGATCTAAAGCATCTTCAAGAGCAAGCTCGAGGGGGAAGTCTAGGTCTG
GAAGTGGATCTGAAAGGAGTCGTTCCGCTAGTGGATCTAGACAGGGGTCTCGCAGTGGGT
CTGCGTCAAGCGCTTCATCACGTCACAGCGGCTCAGATTGACGAACTTAATTATTGTTCC
CGGCACGAGTCGTGAACACGACACGTGTAACCGACTGATGACGTCACCACCGACACTGAC
CAATCGCGTTCGTTCTAGCACTAATCACTCGTAATATGTCTTCCATTTTATTAATCGAAC
AATATGGAAGGTCGTGCTCACTACTCGTGACGGGAATAAGTTTTATTATTATAGCGACAC
TCAAATCGATTATAGTTGTAAGATGTATTTTATAATAAAAATAAACGCCTTTTTGTGCAA
GAGGAATCTAATGGTACTGTTTTTTTTTAATATTCATTCCCTTATAACCTTAAGCGTCCA
CAGACTGTATTAACAAAGTGCAGTTAATTATGCCTGTTTTTATGTTTCCTACCTTTGATG
ATTTACG
(2227 bp)

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