SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_SariASG_c36439_g1_i2
Scaffold_id
NCBI non-redundant
(nr)		PREDICTED:_serine/arginine_repetitive_matrix_protein_1_isoform_X2_[Amyelois_transitella]
Ontology
GO:0000375 P RNA splicing, via transesterification reactions
GO:0000398 P mRNA splicing, via spliceosome
GO:0003677 F DNA binding
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0005681 C spliceosomal complex
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0016363 C nuclear matrix
GO:0016607 C nuclear speck
Transcript
Level		FPKM:4.12 TPM:3.99
ORF EntryO_SariASG11786_complete:A_SariASG_c36439_g1_i2
Sequence
(Nucleotide)
TCACCAATCAACTGGAAGAAAAGGTGCCTAAAATATTTCTCTTACATTACTTTTGTATTT
TTAATACCAAAATGTAATCAATGCAGTTTCTTTACCCATACCATTCGAGATACTAGAACT
GTGTTTTAAGTTGTCAATAGTTTCTTAAAATCTAGTATGAATAGGTACATAAGAAACTGC
AATTGAAGTATGATGTCATATGTAATTGATTGCGTATGGATATTTTTATGGTCCCCATCG
GGTAGTGCGCCGTCGAAGCCGCCACGTCCTGCTGCTGCCTGCTCCCTGCCGCTGCCCGCT
GGCTACGCTCTTATGGAGGCACTTAGAATTTCAATCGGTATTTACGGGGAAATTAAATAC
TTAACCATGCTAATAAATAAATAGCAAAGTGCTCTCCCTCAATTATGCAATAAAAGGAAA
GAACTCGATTGATGCAGTTACTGATCTATATGTTAAAGTCGTTAAGGGAGTGACGTGACT
CAAGGTAAGGAAGTTCCCGTAGTTAGGCCCTGCGTTCAGCATAATGTGGTTGTGTTCGCA
AAACCCTTACAGGTGCAAGTTGTTGAAAAAGGAAGATTGAAGAAGACTGCACTGCGTCTT
CATCTGCTGTAGCAGTTAAAGCAGAGCTTCGTTGCTGTCTTCGAGCGACGCTGCGTCATC
GTCGTCGTCGTCCCAGCACAACGTCACTTCATGCTGTCGACTCTCCTCCACACTCACATA
TACTGCTGTCTTTATGTACATTGATGTCACTTCCCTACCTGAGTCACATCTTTGCTATTT
CAATGAATTCATGTTTTTTTTAGAAGGGCGCTCTTAACGACTTTTCACATTTTTTATTTT
TTTATTTATTGAATATATGTTAGATAAAACGAGTTGCGACGAAAGAGAAAATCGTAAATA
TTCAACTTGTATACCAAAAAACAATAGTATTCAAGTCTGGAAATTTATATAATAAATATA
GTTTAGAGGATGATATTGATTAATAATGTGATGTTTTTCTCTTTCCCCTGTCCTATATGT
CTGCGGCCCCCAGTTCCCTTGTCCAAAGAAAATGCAGATCAATCTCACCGGATTCTTGAA
TGGGAAGAATGCGCGGCTCTTCATGGGTGAACTGTGGGAGCTGCTCCTGAGCGCTCAGGC
TAGTGAGAATGGGATACCGGAGTCATTTACGCAGCAGAAAAAGGAAGAAATAAAGAAGAG
AATGGAGGAACAGCAGAAGGATAAAGACAAAGAGAAGGATCGACGCAGGTCGCGATCGAG
GTCTCGGTCACGTCGACGTTCACGGGACCGGCGTCGCTCGCGTTCACGATCACGTTCTCG
AGATCGCTCCACCGATAGAAAACATCGTAATGGAGGAAGTCCACGACGTTCAAGGCGACA
CAGCAGAGATAAAAGCAGCCCTTCAAAATCATCTGTGATTGAAGACATTAAATTGCCTGA
ACCGCAAGAGAACGGTAACAAATCACCGGAAAAGAAAGAAGAATCGGAAATTAAAGATGA
AGTGGTCCAGAATGTTTCCGTTGAATCAGTGAAGGAAGATGCCAAGGATAGTGATGATAA
AACGGAAAAAATTGACGTTGACAACCAGAAGTCGAGATCTGCATCTCCTGTTAAATCAAC
GGGTGGTGACAAAGCTGACGATAAAACAGTGGATAAAGCACGTAAGTCCTCGAGTGAGAG
GCGTTCTTCTTCAGCTTCATCAAGAGGGAGTGTCAAGAAACGGTCTTCTCATAAGAAGCG
TCAATATCGTTCCAACCGTGATTCGTCCACTAGTGTTAGCCCAAGACGCAGCTCACGTAG
GGAAAGGAGTAAATCAAGGAGACGTAGTAGCCGTCGCAGGTCGTTGGATCGCCGCGAGAG
AGAAAGAGAACGAGAAAGGGAAAGAGAGAGGGAGCGTGAGAGAGAACGCCGTCGCCGAGA
AAGAGAAAGACGAGAAAGGTCGCGGGAACGACGTCGGTCACTTGAGCGTCGGAGACGCTC
CCGATCGCGTTCTCGCCGGCGTACTAGAGAAAGGTCTCGAGACCGTCGTCGTTCGAAGTC
ACGCAGACGCAGCCGCTCGAGGCGTCGCTCCGGACGCCGGTCGCGCGACCGACGCTCTAA
AGACCGACGCTCTAGGGACCGACGCTCAAGGGATAAATCTAGGGATAGGAAATCGCGAGA
CCGGGGAACGAAGGACAGAAGATCCAAAGAGAGAAAGTCGCGTGATAGGAGATCAAGCGA
TATCATAAAGGAGCGATTAGAGAAGTCTGTCTCCATACCTAGGAAAGAAAACCTGGATAA
ATTACATAAAGCGACTTCTGATCGGGTTACAGCTGCACGTGAACAGTCCAAGGAAAGAGT
AATATCAAGTACAAGCAGAGACTCTTCAGTAGCTAAAGAAAAACCCATTGCTCAAGATGA
AAATGAAACCAAGCCATCTCATGTATCTGATGATGAAGAACGAGAGGATATCATACCTAT
TCCTATACTGCGTGATTATTCTAAAAGCCTCTCTCGTACTCCGTCACCTTTCCTGAGAAA
ACATGAAATAGATGTTACTAAAAAGTCTGATGACGGTTCTGATAGAGAACAAAACGAGGA
GGGCACAAAAGCTAAAGAATCGAAGAAGGGTAAACGAAAAGCTCATCAATCTGAATCTGA
AAGTGAAGGTAGTGAAGTTGCAAAATCCAAGAGCAAGCCGAAATTGAAACGCAAAGAAAA
AACCACCTCAAAGAGAACTAAAAAACCCAAGAAAGAAAGTTCCTCAAGTGATAGTGATTC
TGATGATTCCTCATCCAGTGATTCTGAGGAAGATAGGAAAAAGAAGAGTAAAAAGAATGC
TAAAAAGAAGTTAGCGAAGAAATCACGAAAGAAGAGAACGCGTTCATCGAGCTCAGACTC
CAGCTCTGAAGAGGATATTAAACATAAAAGTTCTAAATCCAAACAAAAAAACATTCCAGA
AGAGTCTGACGGTGAAAAGAAAGGTAAGAAACGTGTTAAAGAAACTGGCGGCGAACCTTC
TAGACCGGAAAAAGTTGACAGTAAATCGGGCGGAAAATCAAAGAAAACTGATAATTCAGA
GGACTCGCGTGCTGATAGTTCGGATAGTGATGAAAAATCCGGCAAAAAGAAGATTATGAA
ACACGACTCTTCGAGTTCCGAAAAAGAAACAAAACGTGGAAAAAAGGTCGACACGGCTAA
AGAAAAACCCCTGTCACCGGAAGTGTCGCGATCGAAAAAGTTAGATGAAAAAACTAAACT
AAAGAGTGTTGATGACGTCAAGTCCAAATCTAGAGAAGACTCGGAGAAGAGGGCAAAGAA
ACGTGAAAAGGAAGAATCTTCCTCTGACAGTGACCAAGTTTCCAAAAAGAAAGCTAGAAA
GAAGGTTTCTGACTCTGAATCGGACTCTGACAGTGATGAACCTAAAAAGTCGAAGAAGTC
CAAAAAACATAAGAAACATTTGAAGAAGCATAAGAAACATAAGAAACATAAGAAATCGTC
CAAAAAGAAGGACGAATCTTCCGATAGTGAAGAAGTAGAGGAAGATGAGGAAGAAGGGAA
GGTTAACAATGAGGATTTAGAGAAAAAGTTACGTGAGAGAGCTTTGAAATCAATGAAAAA
ACAAACAAGCGTATCCGGGTCTGAATAGAACCAAAATATTTTAAAAATTTCAATTACCTT
ACACATTTTGCTTTTAGTAATTTCTCTTTTATTATATAAGGAAGGAAATAATTTGTTTTG
GAGTAATTAAAATTAATTACATTATGATTTATTAAATACATATATGTAACGACGGTTTTA
AGATTATCTGTATGTTATTTTGTTAGTAGTAAAGATTGAAAAGAGAAAAAAAAAAA
(3836 bp)

- SilkBase 1999-2023 -