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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_SariASG_c36110_g1_i1
Scaffold_id
NCBI non-redundant
(nr)		DNA_repair_endonuclease_XPF_isoform_X1_[Helicoverpa_armigera]
Ontology
GO:0000014 F single-stranded DNA endodeoxyribonuclease activity
GO:0000110 C nucleotide-excision repair factor 1 complex
GO:0000712 P resolution of meiotic recombination intermediates
GO:0000724 P double-strand break repair via homologous recombination
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003684 F damaged DNA binding
GO:0003697 F single-stranded DNA binding
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0006259 P DNA metabolic process
GO:0006281 P DNA repair
GO:0006289 P nucleotide-excision repair
GO:0006296 P nucleotide-excision repair, DNA incision, 5'-to lesion
GO:0006298 P mismatch repair
GO:0006302 P double-strand break repair
GO:0006310 P DNA recombination
GO:0006974 P cellular response to DNA damage stimulus
GO:0007095 P mitotic G2 DNA damage checkpoint signaling
GO:0007131 P reciprocal meiotic recombination
GO:0007143 P female meiotic nuclear division
GO:0016321 P female meiosis chromosome segregation
GO:0016787 F hydrolase activity
GO:0043234 C protein-containing complex
GO:0045132 P meiotic chromosome segregation
GO:0046982 F protein heterodimerization activity
GO:0051321 P meiotic cell cycle
GO:1901255 P nucleotide-excision repair involved in interstrand cross-link repair
Transcript
Level		FPKM:17.73 TPM:17.17
ORF EntryO_SariASG11342_complete:A_SariASG_c36110_g1_i1
Sequence
(Nucleotide)
CCTAATGTGTTTGGTCTGTGTAATTGTGTATATTATCTAATGTATTGATTTTTGATAAAT
TTGCAAATACTTATTGCTTCTTCTGTTATCGATCAATGGTTTGCATATTGGAAAATTCTT
TATTTCAATGGAAATGGAGACACACAGAAAAACTTGCACAGATGATATCGATGTTGATGA
GTCTAAAAATAGTTTAGCTTTTATTGAAAACAAATATCCCATGTTAGAATTTCAGAAGCA
GATATTCATGGATATTTTCGAAAAAGATGCTTTGGTTATTATGGCAAAGGGCTTAAATTA
CAACACTATAATTGCAAACCTAATGTGGGTGTATAAAGACGCTAGTAACTTGGTGTTGGT
TATAAATAGTAATGAACATGAGGAAAAGTACTTTAGTGAAAAATTTCAGTTAACCGCACT
ACCTAACCTTGGTGCAGAAAGAAAAAAGGTATACTTAGAAGGTGGTGTTCATTTAGTGTC
AACACGTATTTTAGTAGTAGATTTATTAAAAAATAGAGTGCCAATATCTCATATTTCTGG
AATTATTGTTCTCCGAGCTCACAATGTACTAGAGTCTTGTCAAGAGGCATTTGCACTGAG
ATTATATAGACAAAAAAACAAGACAGGATTCATTAAAGCATTTTCTAATTCACCTATTTC
ATTTACATTTGGATATCATCAAGTGGAAAAAGTTATGAGAGCATTGTTTTTAACAGAATT
ATTCTTATGGCCAAGATTCCATGGTGCTATAATCAAGAATCTTAAATACAGACAAGCTCA
AGTGGTTGAACTTCATGTACCTCTCACCACAAACATGACCCACATTCAAGGTTGCCTACT
TGACATTATGAACTATACTGTTAAACAGCTGAAGAGTATCAACAGGACTATAGATTTACA
GGAAATATCAATAGAGAATTGCTTGACAAAAAAATTCCACAAGATACTACAATCACAGTT
AGATTGCGTTTGGAATCAGTTAAGTACCAGAATGAAGGAGTATATTCAAGACCTCAAAGT
TCTTAGGAGCATGATCATAAGCTTAATACATGATGACGCTGTATCATTTTATGCGTTAGT
CAGCAAATACAGAACACCTGAATATGCCAAAATAAATTCCGGATGGATACTACTCGATTC
AGCTGAGGAATTATTTCGTCTAGCGAGATCAAGAGTATTTAATAATAAAAACGAATTCGA
TCCAGAATTTTCACCAAAATGGAAATGTTTGAGTAGCCTGCTGACAGAAGAGATCCCAGA
GGAAGTTAAGAAGGATAAAGAATGGAATCTGAATAAAACGAAAATTCTAGTACTCTGTCA
GGATAATCGAACGTGCTATCAGCTGAACAACTATCTCATGATGGGCCCGAGCAGATATCT
GTTTTACACGGCTTTTAAAACGGACATCACCGTAACAGCTGTAGCGTCGAAATATAAAAA
ATTAAAGAACACAATTCCTTTAGAGAGTCAAGAGGAAAATAAAAAAAATGCCGAGGCGAA
ATTAATAACGACAATTGATTCTGAAGAAAATAACGTGGAAGATGGCGCTGTATTGGATTC
AGTTAAATCAAATTACGTGTTGACTCTAACACAGGCGGATGTCGAGCGTGATATAAAAAA
AGAACATGATGAAAGTATTTTCGAACCCATTTCACAGCTAGATAATTTAGACATAACACA
AATGGAAATCGACAAGCCTGTTATATTTATTCAAACGTTCAAAGAAAATGGAAATACGTT
TTCACTCGAGAACACGTTGGAAGTGCTTAAACCAGAGTATATTATTCTCTATCATTGCGA
CGTGTCCGCTGTAAGGCAAATAGAGTTATACGAAAGTAAGAAAAAACAAGAGGATCAGGC
GTGTAAAATATATTTTTTAATACACGATAAGACAGTAGAAGAACAAGCATACCTTACGTC
TTTGAAGAGAGAAAAGCAAGCGTTCGAGCTACTGATTCAAGCGAAAAGTGTAATGGTGGT
GCCGTCGTATCAAGATGGAAAAACCGACGAATACTTTAACTTAAATGTAGAAGAAGAAGT
AGAGGACGCAGTGAATACTAGGAAAGCTGGCGGGCAGAGCAAGGGACCCAAAGAGAAACC
AGTGATCATAGTGGATATGAGAGAATTTCGTTCAGACCTACCATCTCTGCTCCATAAAAA
AGGAATAAACATTGAACCTGTCACGATAGCAATTGGTGACTATATTTTAACACCAGATAT
ATGCGTCGAAAGAAAGTCTATATCAGATTTAATTGGCTCTTTGAATTCTGGTCGCCTCTA
CACACAGTGCACACAAATGTCTAGGAATTACAGTAGACCTATCCTGCTCATTGAATTTGA
TCAAAATAAACCGTTTAATCTTCAGGGCCATTACGTTGTTTCAACGGATACAGCGGGTGC
GGATATTCAACAAAAACTCCAGCTTCTTACGATACATTTTCCAAGGTTAAAATTGGTCTG
GTCCCCGAGTCCTTACGCTACTGCAGAACTTTTTTACGAATTAAAGCAAGGCCGTCAGAA
TCCAAATATAGAAGAAGCCTTAGCCCACAGTAGTGAAAATGCAGCAGACGATATGCAACA
TGAAAGATATAATACGTCCATACATGATTTCGTACAAAAGTTACCCGGAGTCACTACTAA
AAATATAACTCGGCTCATGAATAAAGGTGTATCTTTAGACCACTTGATAACACTAACTCT
GGAACAACTAACGGACATTATTGAAAATAAAAATGAAGCGGAAACATTACATTCTATACT
CCATGTAAAGGCGCTACCGCAAGACGCTACGAATCAAAACGAAAAACCATTTGGAAAGAA
AAAGTTCACAGGAAAGTTTTACACAAAATAAAAATTATATGTATTTATAGGAATTACAAT
AAATTATTAATTAATATTATTCAAAAAAAAAA
(2912 bp)

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