SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_SariASG_c36040_g1_i1
Scaffold_id
NCBI non-redundant
(nr)		cold_shock_domain-containing_protein_E1_isoform_X1_[Bombyx_mori]
Ontology
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003723 F RNA binding
GO:0005737 C cytoplasm
GO:0005743 C mitochondrial inner membrane
GO:0005794 C Golgi apparatus
GO:0005886 C plasma membrane
GO:0006355 P regulation of transcription, DNA-templated
GO:0044822 F RNA binding
GO:0070937 C CRD-mediated mRNA stability complex
GO:0070966 P nuclear-transcribed mRNA catabolic process, no-go decay
Transcript
Level		FPKM:16.87 TPM:16.34
ORF EntryO_SariASG11208_complete:A_SariASG_c36040_g1_i1
Sequence
(Nucleotide)
TGTCGTCAGTGCTATGCTGTGTCGTGGTGAGGTTTGATAATTTTATTGTTTCGTATTTAT
TTGCCTATCATTAGATTAGTATTCCGTCAGTACAAATTTCGAATATTATAAAGCCTGTGG
GCGTAATGATATTTGCCTTAATGGAAGTATCGTGAAGAGATATCAGTCGTTGGTGGTCGG
TGTAATTTGTGCTGGTCGGCCTATTGGGCGGCCGATATCTATCTACATAGCAATATTAAA
ATGTAGAACGATGTTCGGACGCGACGTTTGGTTATAATCCGGCGTTATTGTGACCATTGA
ACATCGGGTTCGTGTGCATTTTCTAATAGGATTGGATATATACGTAGCTAAATAAGCGTG
TCTGTTGCAGTTTGTGAATATCGGCTTAGAGAAGTATAGATAGCAATACAATTATACGAT
TATCTAAAACCGAGCCAGTACACCACGAAGCTTTGACTCAGCAAGCATTGAAGACATCTG
AGGATTTAGCTTAACATTATCAAAAGTAGTGTAATTTGCAATAATAGTGATTTTTGTGTT
TAAATTGTGACTGTCGCGTTATTTAATTTCGGCGAGTTTGCGTAAAATCAGAAAAAGAAA
ATGTGATTACATTATAAAATTTGTAACAAATATTTAAAAAAACATAAATACCATACAATT
TACTGTGATATATTGATAAAAATACTGAAATTTCGACTAATATACAAAGAAGAGCTAAAA
AATGTCCAGTAATCCTCAGTGGAAAATGTTCCAGCCGCCAGATTCACACTCTTCTCCCTT
GCAAGACATTTTAGATCTCCAACACTCTAATATGCAGGCCAAATCCTCTTATAGGAATGG
CACCTACAGTAGTGAGTACCCTAGCTCTCCCAGGGATAATTATAACAGTTCTAAATCGGG
TAGTGGAAATCGTTTCTCGATTGGTTATAATTTAGACACTTGCCCCGTGGGAGACACAAT
GTACTCTTCTAGTTCATCTAATAACACAACGCAGTATGATTCTATGAATCACCCACCTAT
TAGAGAGACGGGTATTATTGAGAAGCTGCTACACTCTTATGGATTTATTCAGTGCTGTGA
GAGGCAAGCAAGGCTCTTTTTCCATTTTAGTCAGTTCAGTGGCAATACTGAACATCTTAA
AATAGGAGATCCAGTTGAATTCTGTATGGCTTATGATCGTCGTACTGGAAAGCCAATAGC
CTCCACTGTTACGAAAATTGCACCGGAAGTGGTGCTGAGTGAAGCAAGAGTAACTGGTAC
AGTAACTACAGAAGTTAAAGGCGAAGGATCTGGAGATAGTACAGGAAGAATTTCATATGA
GAATCGGGGTGAATGTTTCTTCTTGCCTTACACTAAAGATGATGTTGAGGGCAATGTAAT
TTTGCATACAGGTGATGCTGTTAGCTTTCAGATAGCCACAAATCAGAGAGGAACTTTGGG
TGCTTGTCATATACGTTTTGAAAATCCATCACACCCAGTGAAATACCATGGTGTTATCTG
CTCTATGAAAGAACATTTTGGTTTTATTGAGAGGGCTGACGTTGTAAAAGAAATATTCTT
TCACTATTCTGAAGCTAAATGTAAAGAAAAGTTGACTCTTGGTGATGATGTAGAATTTAA
CATTCATACCAGAAATGGCAAAGAAGTTGCTTGCAATATCAGCAAACTGCCAAGCGGGTC
GGTAGTTTTCGAAGATGTCAGCCCTGAAGTAATGCGAGGGCAAGTGTTGAAACCGTTGGA
ACGTGGTAATATGGTCCGAGCAGTTCAAAACGATCCACTGCCCGGCCGACTCAGATACCG
TGCGGCTGATCATTCTGAAGTTGAGGTGCCATTTGGCGATAAAGATCAATGTGGCGAGTT
TACTCTACGCCATGGAGATTGGGTGCAATTTCAAGTGGCAACTGATAGGAGAGATCAGCT
TAAACGTGCCACCAATATATCTCTGTGGGATGAGTCTTTTAATGTATCAGGAGAACGACG
GGAACAGGGGATTGTCTGTTCGTTGCGAGAAGGTTACGGATTCATCCGTTGCGTCGAGAG
AGAACAAACAATGTTCTTTCACTTCGCCGAAGTTCTCCGCTTGGGACAAGAACTTAGTGT
CGGAGATGAGGTGGAATTCACGGTGGACCCAGGGACAACATTTGCTAATTTAAACACACG
TCAGTTTGCTATTCGCATAAAACACTTGCCCGTTGGTACAGTGCTATTTGAAACGCTGAT
CGAGCGAAGCGTACGTGGCGTTATCGCTAAGGAAGTCCAATTATTTACATCTTCATTAAG
CCCGGTCCGATCGGGATCCATTGACACAAACGGTCTGATTAATTGCGTAATTAATCAGAC
GAAGAAAACGGTACCGTTTGTCGCTAAGAATGTCGAATCTAAAATGCAGCCACGGGTCGG
GGACAAGGTTATCTTTGACCTGTATCAGGTGAAACGTACTAAAGAGTTGGTGGCAATGGC
AGTGCAAATTCAGCACAACCTTACCAATAATGGGAACGGTAGTAGCAGCGGCGCAGCTTC
GAACAGTCGCGCCGTCATGCATGGTTTCATTGCCGCCCTGAAAGACGGTTTCGGCTTCAT
AGAGGCATCTAACCACACTAAGGAAGTCTTCTTCCATTTCAGCAATCTTGAAGGCAGCCC
CGACTCCCTGGAATTGGGCTGTGAAGTGGAGTATACATTGGGGCGTATTATTAGCTCCGG
TGGTGGGTGTGCTAGCGCTGAATTCGTACGGCCTTTGTCGCGTGGCACAATACCGATAGC
AAAACCGTTGGAACCAACACTCTCCGGTACAATTACTAGAACTCTGAGAGCTCTTAACCC
TGATCAACCCCAGTATTCAGGAATGATACAAGTAGAAAATGGGACATCGTACGAATTCGG
TATAATGGGACTCGCGTGCAAACGTGAGATCCTGCAAGTTGGCGATCCGGTTACATTTCA
AGCCGACGTGGAGGGCAGGGCCACTAACATTGTGCCAATAAGAAAGAAGCGGCGTGCCAT
TGTCGATGCTATAAAAGGAGGTTTCGGTTTCCTGTCAGTGGAGGGGGAGGACAATCGCCG
TCTATTCTTCCACATGTCCGAAGTTCGCGGGAACCACTCCGATTTGCAGTCTGGTGATAT
TGTCGAGTTCGTCATGCTCACTAATCCCAGAAATGGGAAATCATCAGCTTGCAATGTCGT
TAAGATCGCTAGTAGACCGATCAGTAAATCCCGCGGTGAACGGCCGGAGCGGCTGTTGGC
CCGGCTGCGGACTCTGTCAATGGAGGAATCCGCCGGGCCGCGTGTTGTCACTTTACGTGC
TCCCCGCGGACCGGACGGTTCCCGGGGCTTTCGCCCACGTCGCCCCATTCCAGAATTGTT
ACGCGAGTGAGATAGCGAGGCACGACCAAAACAATGAATATTGATACTGCATAACCGTTA
GCAGTATCAATAAACACTTTAGTTATTCGGTTTTGATTTCACACAAATTGTTTATTCACA
AGAGACTGATTGATCCTTCTTTAGTTTAGCAGCATTTAGAAATTGTTTTGTTAATTTATT
TAGTTCTATACAATAAACAATGGTATAATGATTAAAAAAAAAAAATTGATTCAAATAAAT
GTATTTTCATCGATGATTCATAATTGTAACACGTGTCACGGATGTGGCTTATGAGTAGTA
GTAATGAGCGGAGATCGGAAGAGCGTCGT
(3689 bp)

- SilkBase 1999-2023 -