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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_SariASG_c35992_g1_i2
Scaffold_id
NCBI non-redundant
(nr)		splicing_factor_3B_subunit_1_[Helicoverpa_armigera]
Ontology
GO:0000245 P spliceosomal complex assembly
GO:0000375 P RNA splicing, via transesterification reactions
GO:0000398 P mRNA splicing, via spliceosome
GO:0003729 F mRNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005681 C spliceosomal complex
GO:0005686 C U2 snRNP
GO:0005689 C U12-type spliceosomal complex
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0016607 C nuclear speck
GO:0034693 C U11/U12 snRNP
GO:0044822 F RNA binding
GO:0045815 P epigenetic maintenance of chromatin in transcription-competent conformation
GO:0071004 C U2-type prespliceosome
GO:0071013 C catalytic step 2 spliceosome
Transcript
Level		FPKM:8.00 TPM:7.75
ORF EntryO_SariASG11106_complete:A_SariASG_c35992_g1_i2
Sequence
(Nucleotide)
GAAATTGCTTTGAATGCTTCGAAATGATATTTATCATTTTCATGAAATTAGTTTGATTTT
TACTACTTCAAACATTATTACATGTGCCTAACATTAATTCTTGTGCTTTGGATAGTGATA
TCGTTATAATGGACAAGATTCCGAGGACACACGAAGCTATTGAAGCACAAATAAGAGAAA
TTCAGTCAAAGAAAAATGAACTACCAGAAAATGGGTCTGGTAAGGGAGTGTCTCTTGGTG
AGACTTACTATGATAGTGACATATATGACAACTCTGGTCAAGGAGGGAAATCCAGATACG
ATGGTTATGTGACATCAATTGCTGCCAATGATGAAGTTGAAGATGATGAAGTGGAAAATG
TTCCTATTAATCAAAAAAGATCTGGATATACAGCACCAGCTTCAATATTGAACGATATTG
CACAGACTGACAAAGACTATGACCCATTTGCTGACAAAAGAAGGCCAACAATTGCAGACA
GAGAAGATGAATATCGCCAAAAAAGGCGTATGATGATAATATCTCCAGAGAGAAGTGATC
CCTTTGCTGAAGGTGGTAAAACACCGGATGTTGGATCTAGGACCTATACAGAGATTATGA
AAGAACAGTACCTCCGTGCTGAAGAAACAGAGTTAAGGAAGAAACTTTTAGAAAGGGCTA
GGGAGGGTACACTGAAGCCGGTCGTGCAATCAAATGGAGAATCTAAAAGTTCAGCAGCTA
AGCGCAAAGGGCGTTGGGATCAGAGTTCAGAAGATACACCTGTAGTAAAAAAAGTTGCAT
CATCAGCCACACCTAGTTCACAGACTACACCATCATGGGATGCTGATAGGGGTACTTGGG
AAGAGACACCTGGTGGCGGGGCTCGTGGGGGTGAAACACCAGGTGCTACTCCATCAGCAC
GTGTATGGGATGCAACTCCTGGTCACATCACACCAGGACACGCCACACCTGGTAGAGAAA
CTCCTGCTCAACATGCGTCAAGAAGGAACCGATGGGATGAGACTCCAAAAACAGACAGAG
AGACACCAGGACATAACAGTGGCTGGGCCGAGACCCCGCGTACTGACCGCGGCACTGGTG
TAGACACGATTCAGGAGACACCAACACCGTCGACAAAACGTCGGTCGCGGTGGGACGAGA
CGCCCGGCGCTACGCCAGCAGCGGCCACGCCCACGCCCTCGCACGCGACGCCATCGCACT
CCACGCCGTCGCACGCGACGCCTTCACATGCCACGCCTACTCCACATACGCCCGTCTTTA
CGCCGGGAGGGTCTACTCCCGTGGGGGTGAAGGCGATGGCGATGGCAACACCGACACCTG
GTCACGTTGCAGCGATGACACCCGAGCAACTGCAAGCATATCGATGGGAGAAAGAGATCG
ATGAACGCAATAGACCTTACACCGATGAAGAACTGGATGCCATGTTCCCCACTGGGTACA
AGGTTTTACCGCCCCCTGCCGGTTATGTTCCGATACGTACTCCTGCGCGTAAGCTGACAG
CAACGCCAACACCCTTGGGTGGTACCCCTATCGGCTTTTTCATGCAGACGGAGGAGTTGG
GCGGGTCCGCGGCGGCGGCGGCGCGGCTCTTGGACCCGCAGCCGAAGGGCACTCAGCAAC
TGCCCTTCATGAAGCCTGAGGATGCTCAGTATTTTGACAAACTGCTAATTGACGTCGACG
AAGACACTCTGTCACCAGAAGAATTGAAAGAGAGGAAGATCATGAAACTGTTATTGAAGA
TCAAGAACGGAACACCGCCGATGTGCAAAGCTGCACTCCGTCAAATAACGGACAAGGCTC
GTGAGTTCGGTGCCGGACCACTCTTCAATCAGATTCTACCACTGCTTATGAGCCCCACAC
TTGAGGATCAAGAGAGACATTTACTTGTTAAAGTGATCGATAGGATCCTGTACAAATTAG
ATGACCTCGTCCGTCCTTATGTCCATAAGATTTTAGTTGTAATTGAACCGTTATTGATTG
ACGAAGATTACTATGCCCGTGTGGAAGGTCGTGAAATTATATCAAATCTGGCTAAAGCTG
CCGGTCTTGCGACTATGATATCAACAATGAGACCGGATATTGACAATATTGATGAATACG
TAAGAAATACTACAGCCAGAGCTTTCGCCGTTGTTGCTTCTGCATTGGGTATACCATCAT
TACTGCCGTTTTTGAAGGCTGTATGTAGATCAAAGAAATCTTGGCAAGCTCGTCACACGG
GTATAAAGATTGTTCAACAGATTGCTATTTTGATGGGCTGCGCCATATTGCCACACTTGA
AATCTTTAGTGGAAATTATTGAACACGGTTTAGTGGACGAGCAACAGAAGGTGCGTACGA
TAACAGCGTTGGCGAGTGCTGCGCTCGCTGAAGCGGCCACACCCTACGGCATCGAGTCGT
TCGACTCCGTGCTAAAGCCGCTCTGGAAGGGTATCCGGACACATCGGGGTAAAGGTCTCG
CTGCGTTCCTGAAGGCGATCGGTTACCTCATACCGCTGATGGACGCCGAATACGCCAATT
ATTACACGCGTGAAGTGATGCTCATCCTCATCCGAGAGTTTCAATCGCCAGATGAGGAAA
TGAAAAAAATCGTATTGAAGGTAGTTAAACAGTGTTGCGGTACAGACGGTGTGGAGCCTC
AATACATAATGGATGAAATATTACCGCATTTCTTCAAACATTTCTGGAATCATCGTATGG
CGCTTGATAGGAGAAATTATCGCCAGCTAGTCGATACAACTGTTGAAATAGCGAACAAAG
TTGGTGCATCAGAAATTATCAACAGGATTGTGGACGATCTCAAAGATGACAATGAACAGT
ATAGAAAAATGGTGATGGAGTCCATAGAAAAGATTCTCGCTAATTTAGGCGCGGCCGATA
TTGATTCTAAACTAGAAGAAGCTCTTATAGATGGTATATTGTATGCTTTCCAAGAACAGA
CAACTGAAGATGTCGTAATGTTAAACGGTTTTGGTACAATAGTAAATCAGCTCGGTAAAC
GTGTGAAACCGTATCTTCCACAAATATGCGGTATAATATTATGGCGTATGAACAATAAGT
CGGCTAAAGTTCGACAGCAGGCGGCCGATCTCATTTCACGTATAGCTGTCGTCATGAAGA
CATGCCAAGAGGAAAAATTGATGGGCCATCTCGGTGTGGTACTTTATGAATATTTGGGAG
AAGAATATCCGGAAGTCCTTGGTTCAATTCTCGGAGCTCTAAAGGCGATCGTTAATGTGA
TCGGTATGACAAAAATGACGCCACCAATTAAGGATTTACTTCCTAGACTCACGCCAATAT
TGAAGAACAGACACGAGAAAGTACAAGAGAACTGTATCGATTTAGTCGGTCGTATAGCTG
ACAGAGGTCCAGAGTTTGTATCCGCCAGAGAATGGATGAGGATATGTTTCGAACTACTGG
AGCTTTTAAAAGCGCACAAAAAGGCTATCAGACGTGCCACAGTCAACACGTTTGGTTACA
TAGCTAAAGCAATTGGTCCGCACGACGTATTAGCAACTCTACTAAACAATTTGAAAGTAC
AAGAGAGACAAAACAGAGTGTGCACCACCGTGGCTATTGCTATTGTCGCCGAGACTTGTT
CGCCGTTCACCGTTTTGCCCGCGCTAATGAATGAATACAGAGTACCCGAGTTAAACGTTC
AAAATGGAGTCTTGAAGTCACTGTCCTTCTTGTTTGAATATATCGGTGAAATGGGCAAAG
ATTACATATACGCAATATGCCCGTTACTCGAAGATGCCCTTATGGATAGAGACCTGGTGC
ATCGGCAGACAGCATGTGCTGCTATAAAACACATGGCCCTTGGTGTTTATGGGTTCGGAT
GTGAAGATGCTTTGGTACATTTATTGAATCATGTATGGCCAAATATATTCGAGACTTCGC
CACATTTGGTACAAGCGTTTATGGACGCCGTCGAAGGAATGCGTGTAGCCCTTGGACCTA
TTAAAATTCTTCAGTACGCTCTCCAGGGTCTGTTTCATCCAGCGAGGAAGGTGCGCGATG
TGTACTGGAAAATATACAACACACTGTACATTGGTGGGCAAGATGCTTTGGTTGCCGGTT
ACCCGAGGATACAGAATGAACCAAACAACCATTTCATAAGATACGAACTTGATTATTTGC
TATAATTTTAATGAGTTTTATTCATAAGTCTCCTTATATTATATAGATTAATTTCAGTCT
TATTGATTAAAAATAATTATATGTAAAATTGTGTATGTGTGTTTTTGTATTATTCGTACT
CAACTCCACGTGTTAGGTTTTAATGCCACTGGCGCAGAGCCGAAGCTAAATGTCAAGTTC
GCAATACAAGTCGCCGAATTCACACACATTTTTGTCAAATATATCAATAGTAATTGGTAA
CGGGAATCTAGAAGTTTCTCCCTACCGAGAATCGCTCAATGCCGTTAAAGAAGTTTCCTT
TAAAGAAAATAGTTTAAGAGCAATTTCCTCTAGATTTTATACTAGTTTCACCTAAATACT
CATTTAGTTTTAATGGAAATTATGGTCAAAGACTAGATCTTTAAAAATGTAAAAAAATAT
TAGTGATTTTGCCATTTAGATTTAAACACTAAGACCAAATCCAACTGGACTGGACATGAC
GGGACGATTTCGGCAGTATTTTGATGTTCATAAGAGCCTTATCAGGGCCTAAATTGAATA
AAGTATTTTTGAATTTGAACAGTAAACTGAATATTATAAGATCGAACATGGCGTCCTATT
CCTTTCTACTACTTACGCCTTATTTTCGGAATTCCCACCATTGCCTATTTATTTATGCCG
GAATTATCACTGTTACGTGTTTGTCTAAAACTAATTGTTACTTTTTGTTTATATCGGTAT
CCCGCC
(4866 bp)

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