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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_SariASG_c35919_g1_i1
Scaffold_id
NCBI non-redundant
(nr)		PREDICTED:_regulator_of_nonsense_transcripts_2_[Amyelois_transitella]
Ontology
GO:0000184 P nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0001889 P liver development
GO:0003723 F RNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006406 P mRNA export from nucleus
GO:0031100 P animal organ regeneration
GO:0035145 C exon-exon junction complex
GO:0042162 F telomeric DNA binding
GO:0048471 C perinuclear region of cytoplasm
Transcript
Level		FPKM:25.11 TPM:24.31
ORF EntryO_SariASG10971_5prime_partial:A_SariASG_c35919_g1_i1
Sequence
(Nucleotide)
ACGTGTGCTCTTCCGATCTCAATTCTCGGTTATATTGTGATAATTTGTTTTTGAACAATT
ACGAGATCCTTTTTTCTGTTTTATTATCAAAAGTGCGATCACTAATTATGACTACTACTG
ATAATGATGGTGAGCAGGGTACAGAAGATAACAATGAAAATACAGAGGAAAATGAGAAAG
CTGCACTTGCAGAGTATATAACAAACCTCGAATCTAGGCTCAAACAGAAATCAGAAATAC
GTAACCTAAATTTAAACTGTGTCCGACCTCCAGACAATCATTTTTCAAAATTAGACTCTG
GGCTGAAGAAAAATACGACATTCGTTAAAAAATTGAAATCTTTTAGTGCAACGCAAATAG
ATGCATTGCTAAAAGATTTTACAGCATTAAACCTGACGAAATATATATCGGAAGTGGCGG
CTGCTATGGTAGAAGCCAAGCTCAAGATGTCAGATATACCTGCTGCAATAACTCTCTGCT
CTTCCCTGCATCGTACTTACAGTGATTTTTCATCGAATTTTTTTGAAAACTGGCAAAAGA
TATTAACTTTTAAAGCCACAGACAAAATATCTAACTTTTCAAAGCTACGAGTCGATATAA
GATTTTACGCTGAACTAGTCTCTGTAGGCATTTTTTCAAATAAAACTGGTTTACCTCTAT
TGGGTAATGTACTTACAGTGTTAATTAATATGGATAAAGATGACCACAATAATATACCAA
TACTATTATCATTTTGTAAACATTGTGGTGAAGATTATGCTGGACTGATACCTAAGAAAA
TAAGAGACACAGCAGAGAAATTAAGCATAACTATTCCAAGAAACACATTTCTACCAGCTG
AAAAGCAAGCTGTGGTTAGAGCATTACTTAAAGATTATTTTATATCACTAACAAAGCATC
TACTTGCTGAAAGGACACAGCTTCAAGCTCTTCATGCTGCTAACCAGAGGACTCTGCACA
CAAGAGGTGAACTCTCCCAGGAGAGGAAAGATCAATTGGAACAGCACCAGGCAACATATG
ACAAACTTCTCAGTGGTGCCCAAAACTTTGCAGAAGTGCTAGGAGAAGAATTGGGAGAGG
CCGGAGAACCTCCAGCTCTCTCAATGACAGTGATTGAGACACAAGGTACAGTAACTATAG
GGGGAAATGAAGAGTTTATTATGCAAGCCGGTACAGACCCCTGGCAGGATGAAGATACCA
GGACATTTTACACTAGTCTACCTGATTTAAAAGTGTTCATGCCTAACTATCAGGTGAAGG
AGGCCGTAAAAAGTAAACCAGAAACAGTTACTGAAGAAATGCTAGATGAAGATTTGAAAG
AAGATGAATTAAGTGATAGCGAGGAACCACTGACGCTGCCAGATGTGGAACAAGAAGAAT
CTCAACCTACTAATGTTTCAAACAAATATGCTCTTGACGCTTTTTTAAATGAACTGCCGA
ATTGCATAAATCGAGAACTCATTGATAACGCAGCTGTTGATTTCGTCTTAAATCTAAATA
CAAAGAATAACCGTAAGAAACTTACTAGAGTACTGTTTAGCGTCGCCAGGACAAGATTAG
ATTTGTTACCATTCTATTCAAGATTCGCAGCAATATTATATCCAGTGTTGCCAGATGTGT
GTGTAGAATTATGCCAGATGTTAAAATTAGATTTCAAATATCATGTGAGGAAAAAGGATC
AAATAAATATTGAGTCAAAGATTAAAGTGGTAAGATTTATAGGTGAATTAGTGAAATTCG
GTTTGTATTCTAAAATGGAAGCGCTGTACTGCTTCAAGGTGTTATTACATGATTTCAAGC
ATCACCACATTGAAATGACATGCAATCTTTTGGAAACCTGTGGGAGATTTCTTTATTGCA
ACCCGGATACCCATCAGAGAACGATGATATACTTGCAACAAATGATGAGGAAGAAGACTG
TTTCAGCCCTGGATTCACGTTACGTAACTCAGATAGAGAATGCCTTCTATTATGTTTGCC
CTCCGGAGGCACCGGCCCAACCCAAAGAGGAGGAACCAGCTATTCATCAGTTTATTAGGA
AAATACTTCACGAAGACTTGCAGAAGAGTAACGAGGAGAAGATACTAAGGCTCATGCGCA
AAATGAACTGGGATGATCCCGAGATAGCGGATGTTGCCATCCAGCATTTAGCTGGCGGTT
GGAGAGTAAGGGCCAGCGCTAGAAGAGCTTTAGCGCGAATGACTGCAGAGTTAGCAGCTT
GGCAGGAAGCCGTGGCACCTGCTGTAGTTGATACTATATTAGAGGAGATCCGCCTCACTA
TGGAAGACCCTCATCCGAGATACAACCAGAGGAGGGTCGCAACAGTACGATATCTCGGTG
AATTGTACAATTACAAGTTACTGGATTCACGGGATGTGTTCACCGTACTCTACTCATTCA
TAACGTTCGGCGTCACGAATGACCACAACAACGTTTCACCATTAGACCCACCGGATAACG
TGTTCAGGATAAGACTAGTCTGCGCGCTCCTCGAGACTTGCGGCGCGTACTTCAACAGCG
GTTCGAGCAAGAAACGTCTGGACTATTTCTTAGTGTTCTTTCAAAATTACTACTGGTTCA
AACACACCGATCCGATTTGGAGCGATGAGAATAAATTCCCTATTTACGTGAAATATATAT
ACCAAGAGTGCCTCACGATGCTGAGGCCGAAGCTATCGTTATTCAGTAATTGGCAGCAGT
GCAAGGATGCCATAGAAGATCTAAGAAAGACTTTGTACCCTGAGTTGGGTGAAGAGGAAT
ATGATAACGATGATCAGGGTGATGATAGTGTCAACGATGGGTTGGATACTATTATAGAGA
CCGACGATGAGACTGATAACCCGCAGCTGCCAGAAGAGAGTTCTGATGAAGAACAGATAA
CAGAGAACACTGCAAATGATGATAACGAAATGCAAGATGATATGACTGTTGAATCCAGAA
GACCTGCCCCTAAACCTGTCGAAGATGTTGAGTTTGAATCGGCATTCGAAAAAATGGTAA
TGGAGAATATTGCTGAGAGACAACGGGAAAATAGACCACAGCAGCGGGACATCGCTGTAC
CGATGACCTGCCGTCAAACTACCAAGAAAACATACGAACAACTGCTGCAAGGAAAAGAAG
GTGTAGAATTTGTACTGATGGTCCGTAAAGGTACAAAGCCCCAATATAAGTCATTCAATG
CACCCCCTGAATTAGCTAGTAATCTGCAACAACAAGCGCTAGCTGATAAGCAGGAGATGG
AGAGAGTGAAAAGATTGACATTAAATATATCAGAGAGACAAGAAGAGGAAGAGTACAGCG
CAGAAAGTGGTGGCGGTTCTGGTGGCATTGGAAATCCCAATAGAGGGCAGCATGTTCGAC
AGAAGTACCAACACCCTAAGGGGGCACCTGATGCCGATCTTATATTTGGCCCTAAAAAGT
TCAAGTGAAATTTAAAAAAAAAAGACTACTATAATACATGAAAATAATTGTATATGGGAC
AGATCGG
(3487 bp)

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