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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_ErmoMG_comp37370_c0_seq1
Scaffold_id
NCBI non-redundant
(nr)		PREDICTED:_sorting_nexin-6_isoform_X3_[Bombyx_mori]
Ontology
GO:0005515 F protein binding
GO:0005622 C intracellular anatomical structure
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005768 C endosome
GO:0005769 C early endosome
GO:0005829 C cytosol
GO:0006810 P transport
GO:0006886 P intracellular protein transport
GO:0006897 P endocytosis
GO:0007175 P negative regulation of epidermal growth factor-activated receptor activity
GO:0008289 F lipid binding
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0016023 C cytoplasmic vesicle
GO:0016050 P vesicle organization
GO:0016241 P regulation of macroautophagy
GO:0019898 C extrinsic component of membrane
GO:0030512 P negative regulation of transforming growth factor beta receptor signaling pathway
GO:0030904 C retromer complex
GO:0030905 C retromer, tubulation complex
GO:0031410 C cytoplasmic vesicle
GO:0031901 C early endosome membrane
GO:0034452 F dynactin binding
GO:0035091 F phosphatidylinositol binding
GO:0042147 P retrograde transport, endosome to Golgi
GO:0042803 F protein homodimerization activity
GO:0045892 P negative regulation of transcription, DNA-templated
GO:0046982 F protein heterodimerization activity
GO:0097422 C tubular endosome
GO:1903593 P regulation of histamine secretion by mast cell
Transcript
Level		FPKM:16.29 TPM:11.98
ORF EntryO_ErmoMG16957_5prime_partial:A_ErmoMG_comp37370_c0_seq1
Sequence
(Nucleotide)
TCGGGCTGTTGATAACTTGTATTTATAATATTAAAAAGATCTTTAACCAAGTAAAACCCC
TTGATCAAAAGCTTTTAGAGTTTGCAAGCATCAAAGAATACTGCAGCAATATGATGCAAG
ACTGTGTGGAAGATTCTTCAAATGACCCTTTATCGACCGTGCCAATATCTGATCCATCTC
CGGCCACTATAGACCCAAAGGTTGAGAAAAAGAAACCAAGCGAGAATGTGTCACTTGCCG
ACAACAGTCTTTTGGTCGACATATCAGACGCGCTCAGTGAAAAAGAAAAAGTGAAATTCA
CAGTCCACACCAAGACAACGTTACCAGAGTTCCAGAAGGCGGAGTTCATTGTGGTACGTC
AGCATGAGGAGTTTGTCTGGCTTCACGATAGATATGAAGAGAATGAAGAGTATGCTGGTT
ATATTATTCCTCCGGCGCCACCACGCCCCGACTTCGATGCCTCTCGGGAGAAGCTGCAGA
GGTTAGGCGAAGGTGAAGGTGCCCTCACCAGGGAAGAATTCCTTAAGATGAAGGAAGAAT
TAGAAGATGAATATCTAGCCACGTTCAAGAAGACAGTGGCCATGCACGAGGTCTTCCTTC
AGCGACTCGCCGCACACCCCGTGTTCCGTAGGGACTCGCATCTCAGGGTATTCCTGGAGT
ACGAACAGGATCTGTGTGCAAAACCGAGAGGGAAGATGGATCTCATCGGAGGATTGGTCC
GTTCAATGACAACTACAACAGATGAGATATACCTCGGTGCAACGGTGCGAGATGTCAATG
ATTTCTTTGAACAAGAAACATCTTTCCTACAAGAATACTACTCGCATTTGAAGGAGGCGG
TCGCTAAAGTTGATCGAATGACTACCAAACACAAAGATGTAGCAGATGCTCACATCAAGC
TGTCATCTTGCATCACTCAGCTGGCGACGAGGGAGCAGCCTCCCATGGAGAGATTCCTCA
CTAAAGCATCAGAAACCTTCGATAAATGTCGGAAAATCGAGGGTCGTATGGCTTCAGACC
AGGACCTGAAGTTGGCCGACACTCTCCGCTACTACATGAGGGACGCTCACGCGGCCAAAG
CTGTCTTAGTGAGGAGACTTAGATGCCTGGCTGCATACGAGGCGGCCAATAGAAACTTAG
AAAAAGCAAGAGCCAAGAACAAAGATGTTCACGCTGCTGAACAGACCCAGGCCGAAGCTT
GCAAGAAATTTGAACAATTATCAGCCAGGGCTCGTGAGGAACTCATCGACTTCAGAACGA
GACGCGTGGCCGCGTTTAGGAAAAGTCTCATAGAGCTGGCGGAGTTAGAAATGAAACACG
CCAGATCACAGCAGGAGTTGTTCAGGAAATCTCTACAAGTTTTGAGAGAGTGTCAGTGAA
TATAGTGATGTTTATAGATCTCCAATATTGGAAATTCCATTATCGAAATAAGCAATTGTA
ATCCTTATGTTGTTATGTGTAATGTTTATTTTAAATTATCGTTAGCGGCCATCGATAAAT
TACGTCACAGGGAGTTTTTAATTTGTGACGTAACTAGAAAATTTTATGCATAATTTGTGA
CGTCACATTAGTTCGTAAATGTGACTAGGCTTTTCACAATGGCTATCTATGGATTCCTAT
CAGAATTGGGACGGTTTCTTTCCTGAAGATTCCGATCCAAACTGTCACAATTCCAGAAAA
CGAACGGTATATTTATCGGAACGGCGAATGTGGATAGCATTAGCAAAGTTCTGGAATCCT
AGTTTTCTGGAAGAAACCAATATTAGCGATAAGATCGCCCTTTATTATAATATATTACTT
ACCTTTATTATAATTACTTCTTAGGTAATTAGGGCAAATAACAATTTTTGAAAATGTATA
CAGAAATTAATTTTAATAAATCTGAGTGGATGACTATGAACAGCTTTACTGCTGTGAATA
GGATGAAGGGAGTAACCATTTTATCAATATTGTGACGTAATTTATAGATTGTTCCTTAGT
TGTATGTGATAAATCACTATAGTTATCAATTCTTATGCTCATTTGGATGCCGATCCGGCT
CGAAGGACCATAATTTTTAAATTTCTTTTTTGTGGAATCAGCATATTCGATTGCCAAATA
TTGCCGATCGGTATCAATTTGTATTTACTTATTAATGTTAAATAGAGATTTTGATAAAAA
AATAGGGTACTGTTTGTTTATTGATACGAGTATCTGTTAATTTGCGACTAATTAAATCGG
CAATCTGTGGTAATTACAATAGAAAAGGGATAACCGAAGTTGTCGATTTTTATGTATCGT
TATAAACGTGATAAATTTTCGTGTGTCAAAGATCTAATGATACAGAGACTTAAATGTAGA
GAACTTTTGTCATTACTTTTTATCATGTATTAAAAAGTTATAAATCAGTGTTACCCTTTT
TTCAGCTGAGTATGAGATTCGGCACAGATATATTTATAAAGTATGAAAATTATAGAAAAT
GTTATTTTGAGTTTTTCTAATTTTAAGTGTATAATACAGTTTACGTAATGTGCTATTATT
TTATTTGGCTATGCA
(2535 bp)

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