SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_ErmoMG_comp37116_c0_seq2
Scaffold_id
NCBI non-redundant
(nr)		EXD1_BOMMO_RecName:_Full=piRNA_biogenesis_protein_EXD1;_AltName:_Full=Exonuclease_3'-5'_domain-containing_protein_1;_AltName:_Full=Exonuclease_3'-5'_domain-like-containing_protein_1;_AltName:_Full=Inactive_exonuclease_EXD1;_Short=BmExd1
Ontology
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0005737 C cytoplasm
GO:0006139 P nucleobase-containing compound metabolic process
GO:0008408 F 3'-5' exonuclease activity
GO:0031047 P gene silencing by RNA
GO:0034587 P piRNA metabolic process
GO:0042803 F protein homodimerization activity
GO:0043186 C P granule
GO:0051321 P meiotic cell cycle
GO:1990923 C PET complex
Transcript
Level		FPKM:11.20 TPM:8.24
ORF EntryO_ErmoMG15751_complete:A_ErmoMG_comp37116_c0_seq2
Sequence
(Nucleotide)
TTTTTTTTTTTTTTTTTCAAGCACAAACACGATTTATTAAGCGACGCTTTTCTTTCACCT
AAGCTTGCTAAAATCTACTCCACGCTACAAACACTACAATGTAATTTTTTAATTAAAATT
CTATAAACCATTTCTCAAAATATTCTCATTCTTACGGTTCATACATTTAGAAAAATCTGT
TTACAGTAATCTACAGGCTATATAACTTTGATTACAATATTTATGAAAAATGCATTGTGA
AAAAAGACATGATCACAGATATACCAAAGCTGACTCACTTTGTGCTCACAATATGTATGA
CAAAATAAGTAATTTCAAATATTTTTCCTACAAAATACAATGCAGTTTTACTGAGTACAC
ATTTGACTTATTATTGCACATTTAACTTATTGCCTAGGATAATTAATGGACACATTGTAA
TACTGTATACCTCTAAAACCAAAAGTGAAGCATTTCTTTAACCCCAAATGCAAAAAAAAG
GGGTTTTTTTATAAAGACAAAAATCATCATTACTGGAATGTTATTAGTATTCTATTGTTG
TTTCAAAATCCGTTGGTATTTGATCTAATTTTCCACATAATTCCCAGGCTTTAAAATCAT
CTGAAGACCGAATGCTTTCAATGTAGCATTCAACTCCTCTGTAAAATGGTAACTGCATTT
CTTCGTTGATGACTTCAGAGAGGTGATGTAAAAATGCAATGTTCTTCGCCAAACTATCTT
TTATTTTGGTAGCCAGTGGCCTCTCTGTACATTGAACAATGTCAAGCTTCTCATCAATGA
TGTTTAGTTGCAAACCCAAATAACTGCTCAAGCATTCTGTTAAAGATTTTACTTTGTTGG
ATACAGAAACTTTTTTATTTTTAGTGATAATTAAATCACCAACCTGGGTGTCAAATACTG
ATTTCAGCTTAACATTATGTTTATGATATAAACAATCAGATAGTTTCCGACAGTCGTGTA
CAATTTTTTTTGGAGTATCACTTTCTAGGATACTCTTTAAGCCTGTATCAAATGCATGAT
ATTTCATCACTTGTATGTCAAAAATGTAAACCTGATCTGGAGTTGACAAAACAAGAAATG
GCATTTTGCACTTTCTCCCCATAGCAGCACCATCATTGCTTACTGCAATAAACTCATGTT
GGTTCAAATCATCAAGTGCTCCATGGAAATTTCTATCGACTTGGTTTATGAAAATATACT
TTTTGGATGTTTTAATTATTTCCTCATATTTTTTTTGTGATATCTTGAGGACTTTCTGTT
GACCTGATTCTTGGAGTTTCACAACTTCTCTAACTTCAGAATCATAGTAATGAAGTACTC
CATCATTGGGATCACCATGGGGAATTTCCTTCACATCATAAAGTGATATTTTGGTTTTAT
CAATAGCCATGCTATAGAATCTTCCTTCAAATACATCGCAATTTTTCGTATGAACTTGTA
ATAGTTCGCCTTTTGTGTAGTGGTTGTCCATTTTGAGTTCGAAATATAAAATAGTTGAGG
GTATCTCTAATCTTTTTTAACCGGTTTAGGATCTCGGTCAGTTTCGCTGTACGCTTTAAA
AATATATAGCCCGAGAGCCACGTGCAGTACAATAACAGCTACAACCGCGGAGTAAACACT
GCTATTGATGGGTTCTAGTCTTAGTATGCCATCGAAAAGTACACTCTTCGCTAAGAAAAA
CGAAAGTACTGGTACGATTATGATAATCAAGCAGTACTTTATTACCGTCCGGAACACCTG
AAAATCTGGCAGCTCATTTGCACGCCCTTCAATCATTATAAAACAAAAATGAAAAATAAA
AACACAAAACAGGCACAGGCCCTCTTTCAAAATTTAGAAATTAGTGTGAAGTTGAAAATA
AAATATATTTCTTTCGTCGACTCCGTTTTGTCCGATCACG
(1900 bp)

- SilkBase 1999-2023 -